UHGV-1518200

Genome information

Genome length 36,469 bps

CDS count 66

Completeness 96.56% (high-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518200
vOTU ID	vOTU-009022
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0278603
BioSample	SAMEA2155512
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.29
Jumbo phage	No

Genome content
Genome length	36,469 bps
GC content	27.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.78%
Average CDS length	504.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518200_1	PHROG	phrog_1281	NA	unknown function
UHGV-1518200_1	UniRef90	UniRef90_A0A2H0RA90	NA	NA
UHGV-1518200_1	eggNOG-mapper	683083.C414_000470009	NA	NA
UHGV-1518200_1	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1518200_1	COG	COG3600	NA	NA
UHGV-1518200_1	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1518200_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1518200_2	PHROG	phrog_894	endolysin	lysis
UHGV-1518200_2	UniRef90	UniRef90_A0A853JTG8	Peptidase M15	NA
UHGV-1518200_2	eggNOG-mapper	903814.ELI_0060	Peptidase M15	NA
UHGV-1518200_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1518200_2	COG	COG3108	NA	NA
UHGV-1518200_3	Structural annotation	PF06946	NA	NA
UHGV-1518200_5	PHROG	phrog_372	tail protein	tail
UHGV-1518200_5	UniRef90	UniRef90_UPI001E5C78A4	NA	NA
UHGV-1518200_5	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1518200_5	Pfam	PF05895	NA	DUF859
UHGV-1518200_5	COG	COG4675	Phage tail collar domain	NA
UHGV-1518200_5	Structural annotation	PF05895, PF00386, MF_04116, NF010681, COG1361	NA	NA
UHGV-1518200_6	PHROG	phrog_6616	tail protein	tail
UHGV-1518200_6	eggNOG-mapper	1305708.M9Q2I5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1518200_6	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1518200_7	PHROG	phrog_1194	NA	unknown function
UHGV-1518200_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1518200_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1518200_8	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-1518200_8	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-1518200_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1518200_9	PHROG	phrog_8355	NA	unknown function
UHGV-1518200_9	UniRef90	UniRef90_UPI001ADD7ADE	Gp15 family bacteriophage protein	NA
UHGV-1518200_9	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-1518200_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1518200_10	PHROG	phrog_8300	NA	unknown function
UHGV-1518200_10	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-1518200_10	Structural annotation	PF06854	NA	NA
UHGV-1518200_11	PHROG	phrog_820	major tail protein	tail
UHGV-1518200_11	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-1518200_11	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-1518200_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1518200_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1518200_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1518200_12	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-1518200_12	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-1518200_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1518200_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1518200_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1518200_13	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-1518200_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1518200_14	PHROG	phrog_8710	NA	unknown function
UHGV-1518200_14	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-1518200_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1518200_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1518200_15	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-1518200_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1518200_18	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1518200_18	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-1518200_18	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1518200_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1518200_19	Structural annotation	MF_02110	NA	NA
UHGV-1518200_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1518200_22	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-1518200_22	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-1518200_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1518200_22	COG	COG2369	NA	NA
UHGV-1518200_22	Structural annotation	PF06152	NA	NA
UHGV-1518200_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1518200_24	UniRef90	UniRef90_R5A3Z5	Putative phage minor capsid protein	NA
UHGV-1518200_24	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-1518200_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1518200_25	UniRef90	UniRef90_R5A0K2	Putative phage terminase large subunit	NA
UHGV-1518200_25	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-1518200_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1518200_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1518200_26	PHROG	phrog_2412	NA	unknown function
UHGV-1518200_26	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-1518200_26	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-1518200_27	Structural annotation	PF15456	NA	NA
UHGV-1518200_28	PHROG	phrog_20735	NA	unknown function
UHGV-1518200_28	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-1518200_28	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-1518200_28	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-1518200_29	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1518200_29	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1518200_29	UniRef90	UniRef90_A0A350S1Q4	RNA-splicing ligase RtcB	NA
UHGV-1518200_29	eggNOG-mapper	1410653.JHVC01000007_gene540	tRNA-splicing ligase RtcB	NA
UHGV-1518200_29	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1518200_29	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1518200_29	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1518200_41	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1518200_41	eggNOG-mapper	1110697.NCAST_08_01370	NA	NA
UHGV-1518200_44	PHROG	phrog_7839	NA	unknown function
UHGV-1518200_44	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-1518200_45	Structural annotation	PF09947	NA	NA
UHGV-1518200_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1518200_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1518200_50	UniRef90	UniRef90_A0A7X6XBF9	Single-stranded DNA-binding protein	NA
UHGV-1518200_50	eggNOG-mapper	169963.lmo2308	DNA-binding protein	NA
UHGV-1518200_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1518200_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1518200_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1518200_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1518200_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1518200_51	PHROG	phrog_1123	NA	unknown function
UHGV-1518200_51	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-1518200_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1518200_52	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1518200_52	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-1518200_52	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1518200_56	PHROG	phrog_674	NA	unknown function
UHGV-1518200_56	UniRef90	UniRef90_A0A7X7EMF4	NA	NA
UHGV-1518200_56	eggNOG-mapper	754027.HMPREF9554_00708	NA	NA
UHGV-1518200_56	Pfam	PF07083	NA	DUF1351
UHGV-1518200_56	Structural annotation	PF07083	NA	NA
UHGV-1518200_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1518200_57	UniRef90	UniRef90_A0A0F4VQR1	Essential recombination function protein	NA
UHGV-1518200_57	eggNOG-mapper	318464.IO99_00460	ERF superfamily	NA
UHGV-1518200_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-1518200_57	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1518200_58	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1518200_58	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1518200_58	UniRef90	UniRef90_UPI000EA32791	DnaD domain protein	NA
UHGV-1518200_58	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-1518200_58	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1518200_58	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1518200_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1518200_58	Structural annotation	TIGR01714	NA	NA
UHGV-1518200_60	PHROG	phrog_989	NA	unknown function
UHGV-1518200_60	eggNOG-mapper	515620.EUBELI_01804	NA	NA
UHGV-1518200_61	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-1518200_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1518200_61	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1518200_62	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-1518200_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1518200_63	PHROG	phrog_87	metallo-protease	other
UHGV-1518200_63	UniRef90	UniRef90_R5AAT8	Peptidase_M78 domain-containing protein	NA
UHGV-1518200_63	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1518200_63	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1518200_65	KOfam	K14059	int; integrase	NA
UHGV-1518200_65	PHROG	phrog_1	integrase	integration and excision
UHGV-1518200_65	UniRef90	UniRef90_R5A639	Tyr recombinase domain-containing protein	NA
UHGV-1518200_65	eggNOG-mapper	888746.HMPREF9180_0151	Belongs to the 'phage' integrase family	NA
UHGV-1518200_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1518200_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1518200_65	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA