UHGV-1518421

Genome information

Genome length 33,980 bps

CDS count 48

Completeness 99.42% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518421
vOTU ID	vOTU-075973
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0237641
BioSample	SAMN02675046
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.64
Jumbo phage	No

Genome content
Genome length	33,980 bps
GC content	41.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.86%
Average CDS length	661.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518421_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1518421_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1518421_1	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-1518421_1	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-1518421_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1518421_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1518421_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1518421_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1518421_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1518421_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1518421_2	UniRef90	UniRef90_A0A374JNY9	XRE family transcriptional regulator	NA
UHGV-1518421_2	eggNOG-mapper	1226325.HMPREF1548_06747	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1518421_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1518421_2	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-1518421_3	UniRef90	UniRef90_A0A374JR06	DNA-binding protein	NA
UHGV-1518421_3	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-1518421_7	PHROG	phrog_5302	tail protein	tail
UHGV-1518421_7	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-1518421_7	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-1518421_7	Structural annotation	COG1262	NA	NA
UHGV-1518421_9	PHROG	phrog_20014	NA	unknown function
UHGV-1518421_9	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-1518421_10	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1518421_10	UniRef90	UniRef90_A0A7X5D2G2	Radical SAM protein	NA
UHGV-1518421_10	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-1518421_10	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1518421_10	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-1518421_11	PHROG	phrog_25385	NA	unknown function
UHGV-1518421_11	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-1518421_11	Structural annotation	PF02970	NA	NA
UHGV-1518421_13	eggNOG-mapper	411470.RUMGNA_02040	NA	NA
UHGV-1518421_14	PHROG	phrog_24386	NA	unknown function
UHGV-1518421_14	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-1518421_14	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-1518421_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1518421_18	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-1518421_18	Structural annotation	PF21578	NA	NA
UHGV-1518421_19	PHROG	phrog_824	NA	unknown function
UHGV-1518421_19	UniRef90	UniRef90_A0A494WNF4	VRR-NUC domain-containing protein	NA
UHGV-1518421_19	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-1518421_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1518421_20	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-1518421_21	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-1518421_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1518421_22	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-1518421_22	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-1518421_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1518421_23	PHROG	phrog_1066	NA	unknown function
UHGV-1518421_23	UniRef90	UniRef90_B0NAT3	Putative phage terminase, small subunit, P27 family	NA
UHGV-1518421_23	eggNOG-mapper	411468.CLOSCI_00552	NA	NA
UHGV-1518421_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1518421_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1518421_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1518421_24	UniRef90	UniRef90_B0NAT2	Putative phage terminase, large subunit	NA
UHGV-1518421_24	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-1518421_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1518421_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1518421_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1518421_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1518421_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1518421_25	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-1518421_25	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-1518421_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1518421_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1518421_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1518421_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1518421_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1518421_26	UniRef90	UniRef90_B0NAT0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1518421_26	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-1518421_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1518421_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1518421_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1518421_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1518421_27	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-1518421_27	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-1518421_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1518421_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1518421_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1518421_28	PHROG	phrog_5223	neck protein	connector
UHGV-1518421_28	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-1518421_28	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-1518421_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1518421_29	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-1518421_29	eggNOG-mapper	1497679.EP56_05745	head-tail adaptor	NA
UHGV-1518421_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1518421_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1518421_29	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-1518421_30	UniRef90	UniRef90_UPI001C00E12E	HK97 gp10 family phage protein	NA
UHGV-1518421_30	eggNOG-mapper	411902.CLOBOL_03876	COG NOG18351 non supervised orthologous group	NA
UHGV-1518421_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1518421_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1518421_31	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-1518421_31	Structural annotation	PF20765	NA	NA
UHGV-1518421_32	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1518421_32	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-1518421_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1518421_33	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-1518421_33	Structural annotation	PF17388	NA	NA
UHGV-1518421_34	eggNOG-mapper	411468.CLOSCI_00541	NA	NA
UHGV-1518421_35	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1518421_35	UniRef90	UniRef90_A0A174XH68	Phage tail tape measure protein, TP901 family	NA
UHGV-1518421_35	eggNOG-mapper	411468.CLOSCI_00540	Phage tail tape measure protein, TP901 family	NA
UHGV-1518421_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1518421_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1518421_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1518421_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1518421_36	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-1518421_36	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1518421_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-1518421_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1518421_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1518421_37	UniRef90	UniRef90_A0A374JQG5	Prophage_tail domain-containing protein	NA
UHGV-1518421_37	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1518421_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1518421_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1518421_37	COG	COG4926	Phage-related protein	NA
UHGV-1518421_37	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-1518421_39	eggNOG-mapper	1120933.ATUY01000004_gene1007	NA	NA
UHGV-1518421_40	PHROG	phrog_19280	NA	unknown function
UHGV-1518421_40	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-1518421_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1518421_40	Structural annotation	PF10651, NF010435	NA	NA
UHGV-1518421_41	PHROG	phrog_5302	tail protein	tail
UHGV-1518421_41	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-1518421_41	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-1518421_41	Structural annotation	COG1262	NA	NA
UHGV-1518421_42	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1518421_42	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1518421_42	UniRef90	UniRef90_A0A1Y4H5J8	Reverse transcriptase domain-containing protein	NA
UHGV-1518421_42	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1518421_42	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1518421_42	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1518421_42	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1518421_42	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1518421_43	PHROG	phrog_20201	NA	unknown function
UHGV-1518421_44	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1518421_44	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1518421_45	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-1518421_46	PHROG	phrog_263	holin	lysis
UHGV-1518421_46	UniRef90	UniRef90_A0A3E3IC15	Phage holin	NA
UHGV-1518421_46	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-1518421_46	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1518421_46	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1518421_46	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1518421_47	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1518421_47	PHROG	phrog_1794	amidase	lysis
UHGV-1518421_47	UniRef90	UniRef90_D4LID8	Muramidase (Flagellum-specific)	NA
UHGV-1518421_47	eggNOG-mapper	411468.CLOSCI_00531	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1518421_47	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1518421_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1518421_47	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1518421_47	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023, COG4991	NA	NA
UHGV-1518421_48	UniRef90	UniRef90_R6CDG9	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-1518421_48	eggNOG-mapper	658088.HMPREF0987_00181	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-1518421_48	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA