UHGV-1518684

Genome information

Genome length 28,135 bps

CDS count 40

Completeness 77.81% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518684
vOTU ID	vOTU-036291
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0237373
BioSample	SAMEA2152064
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.62
Jumbo phage	No

Genome content
Genome length	28,135 bps
GC content	55.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.39%
Average CDS length	661.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518684_1	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1518684_1	PHROG	phrog_4646	transposase	integration and excision
UHGV-1518684_1	UniRef90	UniRef90_U2S074	Integrase core domain protein	NA
UHGV-1518684_1	eggNOG-mapper	1226322.HMPREF1545_04019	PFAM Integrase catalytic region	NA
UHGV-1518684_1	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1518684_1	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-1518684_1	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1518684_1	Structural annotation	PF13358, PF13384, NF033563, COG2826	NA	NA
UHGV-1518684_2	PHROG	phrog_13890	NA	unknown function
UHGV-1518684_2	UniRef90	UniRef90_U2QSH7	Ribbon-helix-helix protein, CopG family	NA
UHGV-1518684_2	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-1518684_2	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-1518684_3	UniRef90	UniRef90_U2Q8Q2	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-1518684_3	eggNOG-mapper	1226322.HMPREF1545_04021	Helix-turn-helix XRE-family like proteins	NA
UHGV-1518684_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1518684_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1518684_4	PHROG	phrog_20920	NA	unknown function
UHGV-1518684_4	UniRef90	UniRef90_UPI001A9B8BD8	SHOCT domain-containing protein	NA
UHGV-1518684_4	eggNOG-mapper	1226322.HMPREF1545_04022	NA	NA
UHGV-1518684_4	Structural annotation	PF16674	NA	NA
UHGV-1518684_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1518684_5	UniRef90	UniRef90_UPI0012B5F359	HK97 gp10 family phage protein	NA
UHGV-1518684_5	eggNOG-mapper	756499.Desde_1087	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1518684_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1518684_5	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1518684_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1518684_6	PHROG	phrog_7698	endolysin	lysis
UHGV-1518684_6	UniRef90	UniRef90_U2S079	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1518684_6	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1518684_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1518684_6	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1518684_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1518684_6	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF041850, COG3023, COG4991	NA	NA
UHGV-1518684_8	PHROG	phrog_17876	NA	unknown function
UHGV-1518684_8	eggNOG-mapper	1226322.HMPREF1545_04026	NA	NA
UHGV-1518684_9	PHROG	phrog_1863	NA	unknown function
UHGV-1518684_9	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-1518684_9	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1518684_10	PHROG	phrog_30034	NA	unknown function
UHGV-1518684_10	UniRef90	UniRef90_U2S8P1	Carbohydrate binding domain protein	NA
UHGV-1518684_10	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-1518684_10	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1518684_10	Structural annotation	PF14600, COG3979	NA	NA
UHGV-1518684_11	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1518684_11	UniRef90	UniRef90_U2S084	Fibronectin type-III domain-containing protein	NA
UHGV-1518684_11	eggNOG-mapper	1226322.HMPREF1545_04029	cellulose binding	NA
UHGV-1518684_11	Pfam	PF19789	NA	DUF6273
UHGV-1518684_11	COG	COG4447	NA	NA
UHGV-1518684_11	Structural annotation	PF19789, PF00041, PF15418, MF_04116, NF010681, COG3401	NA	NA
UHGV-1518684_12	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1518684_12	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1518684_12	UniRef90	UniRef90_U2QSI4	Reverse transcriptase	NA
UHGV-1518684_12	eggNOG-mapper	1226322.HMPREF1545_04030	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1518684_12	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1518684_12	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1518684_12	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1518684_12	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1518684_13	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1518684_13	UniRef90	UniRef90_A0A1M6M548	23S rRNA-intervening sequence protein	NA
UHGV-1518684_13	eggNOG-mapper	1226322.HMPREF1545_04032	NA	NA
UHGV-1518684_13	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-1518684_14	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1518684_14	Structural annotation	PF12571	NA	NA
UHGV-1518684_15	PHROG	phrog_521	tail protein	tail
UHGV-1518684_15	UniRef90	UniRef90_UPI001956D7D3	NA	NA
UHGV-1518684_15	eggNOG-mapper	1226322.HMPREF1545_04034	NA	NA
UHGV-1518684_15	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1518684_15	COG	COG3778	NA	NA
UHGV-1518684_15	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1518684_16	PHROG	phrog_1608	tail protein	tail
UHGV-1518684_16	UniRef90	UniRef90_U2S087	Baseplate J-like protein	NA
UHGV-1518684_16	eggNOG-mapper	1226322.HMPREF1545_04035	baseplate J-like protein	NA
UHGV-1518684_16	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1518684_16	COG	COG3299	NA	NA
UHGV-1518684_16	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1518684_17	PHROG	phrog_120	baseplate protein	tail
UHGV-1518684_17	UniRef90	UniRef90_U2QSJ0	Phage protein XkdS domain protein	NA
UHGV-1518684_17	eggNOG-mapper	1226322.HMPREF1545_04036	NA	NA
UHGV-1518684_17	Pfam	PF10934	NA	DUF2634
UHGV-1518684_17	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1518684_17	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1518684_18	PHROG	phrog_579	NA	unknown function
UHGV-1518684_18	UniRef90	UniRef90_UPI0006828886	NA	NA
UHGV-1518684_18	eggNOG-mapper	1122919.KB905569_gene2954	NA	NA
UHGV-1518684_18	Pfam	PF10844	NA	DUF2577
UHGV-1518684_18	Structural annotation	PF10844	NA	NA
UHGV-1518684_19	PHROG	phrog_400	tail protein	tail
UHGV-1518684_19	UniRef90	UniRef90_W4V9W9	Phage-like element PBSX protein XkdQ	NA
UHGV-1518684_19	eggNOG-mapper	1226322.HMPREF1545_04038	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1518684_19	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1518684_19	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1518684_20	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1518684_20	PHROG	phrog_380	endolysin	lysis
UHGV-1518684_20	UniRef90	UniRef90_U2S8Q1	LysM domain protein	NA
UHGV-1518684_20	eggNOG-mapper	1226322.HMPREF1545_04039	LysM domain	NA
UHGV-1518684_20	Pfam	PF01476	LysM domain	LysM
UHGV-1518684_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1518684_20	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1518684_21	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1518684_21	UniRef90	UniRef90_UPI001786603C	tape measure protein	NA
UHGV-1518684_21	eggNOG-mapper	1226322.HMPREF1545_04040	tape measure	NA
UHGV-1518684_21	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1518684_21	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-1518684_22	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1518684_22	UniRef90	UniRef90_U2QSJ4	Phage XkdN-like protein	NA
UHGV-1518684_22	eggNOG-mapper	1226322.HMPREF1545_04041	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1518684_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1518684_22	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1518684_23	PHROG	phrog_365	tail protein	tail
UHGV-1518684_23	UniRef90	UniRef90_U2Q8R6	Putative core tail protein	NA
UHGV-1518684_23	eggNOG-mapper	1226322.HMPREF1545_04042	Phage tail tube protein	NA
UHGV-1518684_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1518684_23	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1518684_24	PHROG	phrog_279	tail sheath	tail
UHGV-1518684_24	UniRef90	UniRef90_U2QRN1	Tat pathway signal sequence domain protein	NA
UHGV-1518684_24	eggNOG-mapper	1226322.HMPREF1545_04043	PFAM Phage tail sheath protein	NA
UHGV-1518684_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1518684_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1518684_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1518684_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1518684_25	PHROG	phrog_966	NA	unknown function
UHGV-1518684_26	PHROG	phrog_525	NA	unknown function
UHGV-1518684_26	UniRef90	UniRef90_M9L968	Outer membrane protein	NA
UHGV-1518684_26	eggNOG-mapper	1226322.HMPREF1545_04045	NA	NA
UHGV-1518684_26	Pfam	PF20765	NA	DUF6838
UHGV-1518684_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1518684_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1518684_27	UniRef90	UniRef90_UPI0012B5F359	HK97 gp10 family phage protein	NA
UHGV-1518684_27	eggNOG-mapper	1121121.KB894312_gene3153	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1518684_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1518684_27	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1518684_28	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1518684_28	UniRef90	UniRef90_UPI001958CF31	ABC transporter ATP-binding protein	NA
UHGV-1518684_28	eggNOG-mapper	1226322.HMPREF1545_04046	NA	NA
UHGV-1518684_28	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1518684_29	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1518684_29	UniRef90	UniRef90_UPI0006821A34	phage head-tail connector protein	NA
UHGV-1518684_29	eggNOG-mapper	1226322.HMPREF1545_04047	NA	NA
UHGV-1518684_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1518684_29	Structural annotation	PF05135	NA	NA
UHGV-1518684_30	Structural annotation	PF12949, PF18885	NA	NA
UHGV-1518684_31	UniRef90	UniRef90_A0A644YJM4	S-l_SbsC_C domain-containing protein	NA
UHGV-1518684_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1518684_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1518684_32	UniRef90	UniRef90_U2S0A2	Putative phage minor structural protein GP20	NA
UHGV-1518684_32	eggNOG-mapper	1118054.CAGW01000102_gene4698	Phage minor structural protein GP20	NA
UHGV-1518684_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1518684_32	Structural annotation	PF06810	NA	NA
UHGV-1518684_33	eggNOG-mapper	903814.ELI_3212	NA	NA
UHGV-1518684_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1518684_34	UniRef90	UniRef90_A0A1C6AIQ5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1518684_34	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1518684_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1518684_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1518684_34	COG	COG2369	NA	NA
UHGV-1518684_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1518684_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-1518684_35	UniRef90	UniRef90_UPI001898D14F	phage portal protein	NA
UHGV-1518684_35	eggNOG-mapper	1226322.HMPREF1545_04054	phage portal protein, SPP1	NA
UHGV-1518684_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1518684_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1518684_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1518684_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1518684_36	UniRef90	UniRef90_H7BWE9	Terminase_3 domain-containing protein	NA
UHGV-1518684_36	eggNOG-mapper	1226322.HMPREF1545_04055	Phage terminase, large subunit, PBSX family	NA
UHGV-1518684_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1518684_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1518684_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1518684_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1518684_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1518684_37	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1518684_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1518684_37	UniRef90	UniRef90_A0A1Q6KQ99	Terminase small subunit	NA
UHGV-1518684_37	eggNOG-mapper	1226322.HMPREF1545_04056	Terminase Small Subunit	NA
UHGV-1518684_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1518684_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1518684_37	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1518684_38	Structural annotation	PF04545, TIGR01636	NA	NA
UHGV-1518684_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1518684_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1518684_39	UniRef90	UniRef90_A0A1C6AHY8	Single-stranded DNA-binding protein	NA
UHGV-1518684_39	eggNOG-mapper	1226322.HMPREF1545_04059	Single-strand binding protein family	NA
UHGV-1518684_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1518684_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1518684_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1518684_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1518684_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1518684_40	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1518684_40	UniRef90	UniRef90_A0A2G5NZ04	MazG domain-containing protein (Fragment)	NA
UHGV-1518684_40	eggNOG-mapper	1226322.HMPREF1545_04060	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1518684_40	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA