UHGV-1518742

Genome information

Genome length 33,721 bps

CDS count 45

Completeness 96.57% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518742
vOTU ID	vOTU-067693
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0244503
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.78
Jumbo phage	No

Genome content
Genome length	33,721 bps
GC content	68.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.08%
Average CDS length	706.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518742_2	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1518742_2	UniRef90	UniRef90_A0A8F3EBC1	MuF-like minor capsid protein	NA
UHGV-1518742_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-1518742_3	UniRef90	UniRef90_UPI0010A24F20	phage portal protein	NA
UHGV-1518742_3	eggNOG-mapper	158787.BSCA_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1518742_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1518742_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1518742_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1518742_4	UniRef90	UniRef90_UPI0010A21ED5	terminase	NA
UHGV-1518742_4	eggNOG-mapper	471856.Jden_2165	Terminase	NA
UHGV-1518742_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1518742_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1518742_5	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-1518742_5	UniRef90	UniRef90_UPI001B8C747A	terminase	NA
UHGV-1518742_5	eggNOG-mapper	208439.AJAP_28070	NA	NA
UHGV-1518742_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1518742_6	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1518742_7	PHROG	phrog_31947	NA	unknown function
UHGV-1518742_7	eggNOG-mapper	1120944.JONS01000016_gene1221	NA	NA
UHGV-1518742_17	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1518742_17	UniRef90	UniRef90_A0A8J3FV65	Bacteriophage protein	NA
UHGV-1518742_17	eggNOG-mapper	10732.K4HYU3_9CAUD	NA	NA
UHGV-1518742_17	Structural annotation	PF12850, PF01047, MF_00325, NF003118, COG1311	NA	NA
UHGV-1518742_18	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1518742_18	eggNOG-mapper	1121934.AUDX01000002_gene2804	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	NA
UHGV-1518742_18	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1518742_18	COG	COG0695	Glutaredoxin	NA
UHGV-1518742_18	Structural annotation	PF00462, MF_01132, NF007657, COG0695	NA	NA
UHGV-1518742_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1518742_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1518742_20	UniRef90	UniRef90_UPI001555899C	single-stranded DNA-binding protein	NA
UHGV-1518742_20	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1518742_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1518742_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1518742_20	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1518742_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1518742_21	UniRef90	UniRef90_A0A4D6TAS4	Holliday junction resolvase	NA
UHGV-1518742_21	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-1518742_21	Structural annotation	COG1591	NA	NA
UHGV-1518742_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1518742_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1518742_22	UniRef90	UniRef90_UPI00058DC7CC	dUTP diphosphatase	NA
UHGV-1518742_22	eggNOG-mapper	465515.Mlut_13120	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1518742_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-1518742_22	Pfam	PF11753	NA	DUF3310
UHGV-1518742_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1518742_23	PHROG	phrog_1590	NA	unknown function
UHGV-1518742_23	eggNOG-mapper	1089544.KB912942_gene1101	response regulator	NA
UHGV-1518742_23	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1518742_23	Structural annotation	TIGR03070	NA	NA
UHGV-1518742_24	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1518742_24	UniRef90	UniRef90_G9FH58	Rect-like protein	NA
UHGV-1518742_24	eggNOG-mapper	525268.HMPREF0308_2040	NA	NA
UHGV-1518742_24	Pfam	PF03837	RecT family	RecT
UHGV-1518742_24	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1518742_25	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1518742_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1518742_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1518742_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1518742_26	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-1518742_26	eggNOG-mapper	886293.Sinac_0836	Participates in initiation and elongation during chromosome replication	NA
UHGV-1518742_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1518742_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-1518742_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1518742_32	Structural annotation	PF00331, MF_00097, NF000736, COG3693	NA	NA
UHGV-1518742_33	eggNOG-mapper	888439.HMPREF9240_01845	NA	NA
UHGV-1518742_33	Structural annotation	PF05475, NF033147	NA	NA
UHGV-1518742_34	Structural annotation	PF21466, PF20328, PF00386, TIGR04362	NA	NA
UHGV-1518742_35	eggNOG-mapper	521393.JH806633_gene1287	NA	NA
UHGV-1518742_35	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1518742_36	Structural annotation	PF19266, NF033675, TIGR02126, COG4718	NA	NA
UHGV-1518742_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1518742_37	UniRef90	UniRef90_UPI0010A250C0	phage tail tape measure protein	NA
UHGV-1518742_37	eggNOG-mapper	1349820.M707_02760	Phage tail tape measure protein, TP901 family	NA
UHGV-1518742_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1518742_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1518742_37	COG	COG5283	Phage-related tail protein	NA
UHGV-1518742_37	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1518742_40	PHROG	phrog_2491	major tail protein	tail
UHGV-1518742_40	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-1518742_40	COG	COG1572	Serine protease, subtilase family	NA
UHGV-1518742_40	Structural annotation	PF16460, PF16400, TIGR02126, COG5437	NA	NA
UHGV-1518742_42	PHROG	phrog_19109	NA	unknown function
UHGV-1518742_42	Structural annotation	TIGR01725	NA	NA
UHGV-1518742_43	PHROG	phrog_13779	NA	unknown function
UHGV-1518742_43	UniRef90	UniRef90_A0A8B3RKD9	Phage associated protein	NA
UHGV-1518742_43	eggNOG-mapper	649831.L083_0366	NA	NA
UHGV-1518742_43	Pfam	PF19586	NA	DUF6093
UHGV-1518742_43	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1518742_44	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1518742_44	eggNOG-mapper	471856.Jden_2170	NA	NA
UHGV-1518742_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1518742_45	PHROG	phrog_283	major head protein	head and packaging
UHGV-1518742_45	UniRef90	UniRef90_A0A8F3EAH9	Major capsid protein	NA
UHGV-1518742_45	eggNOG-mapper	1451189.CFAL_09695	P22 coat protein - gene protein 5	NA
UHGV-1518742_45	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA