UHGV-1519006

Genome information

Genome length 23,237 bps

CDS count 32

Completeness 99.69% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-1519006
vOTU ID	vOTU-008196
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239009
BioSample	SAMEA2042509
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.37
Jumbo phage	No

Genome content
Genome length	23,237 bps
GC content	45.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.47%
Average CDS length	659.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1519006_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1519006_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1519006_1	UniRef90	UniRef90_UPI001F1D22BF	tyrosine-type recombinase/integrase	NA
UHGV-1519006_1	eggNOG-mapper	545697.HMPREF0216_02226	Belongs to the 'phage' integrase family	NA
UHGV-1519006_1	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1519006_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1519006_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1519006_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1519006_2	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1519006_3	UniRef90	UniRef90_UPI0015FC4988	NA	NA
UHGV-1519006_3	Pfam	PF18903	NA	DUF5659
UHGV-1519006_5	PHROG	phrog_15768	NA	unknown function
UHGV-1519006_5	Pfam	PF19808	NA	DUF6291
UHGV-1519006_5	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1519006_7	PHROG	phrog_2412	NA	unknown function
UHGV-1519006_7	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-1519006_7	eggNOG-mapper	665942.HMPREF1022_00986	NA	NA
UHGV-1519006_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1519006_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1519006_8	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-1519006_8	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-1519006_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1519006_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1519006_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1519006_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-1519006_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1519006_9	Structural annotation	PF21226, TIGR04183, COG2372	NA	NA
UHGV-1519006_10	KOfam	K08135	COL15A; collagen type XV alpha	NA
UHGV-1519006_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1519006_10	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1519006_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1519006_14	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-1519006_14	eggNOG-mapper	1280689.AUJC01000007_gene3320	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1519006_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1519006_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1519006_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1519006_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1519006_15	UniRef90	UniRef90_A0A6N3FUV3	Phage Mu protein F like protein	NA
UHGV-1519006_15	eggNOG-mapper	1540257.JQMW01000009_gene3369	Phage Mu protein F like protein	NA
UHGV-1519006_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1519006_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1519006_15	COG	COG2369	NA	NA
UHGV-1519006_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1519006_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1519006_16	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-1519006_16	eggNOG-mapper	1111134.HMPREF1253_1185	NA	NA
UHGV-1519006_16	Pfam	PF14265	NA	DUF4355
UHGV-1519006_16	Structural annotation	PF14265	NA	NA
UHGV-1519006_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-1519006_17	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1519006_17	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-1519006_17	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1519006_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1519006_18	UniRef90	UniRef90_UPI000D717081	phage head-tail connector protein	NA
UHGV-1519006_18	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-1519006_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1519006_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1519006_19	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1519006_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1519006_20	UniRef90	UniRef90_A0A136Q8F4	Phage protein, HK97 gp10 family	NA
UHGV-1519006_20	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1519006_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1519006_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1519006_20	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1519006_21	PHROG	phrog_78	tail terminator	connector
UHGV-1519006_21	eggNOG-mapper	1329516.JPST01000016_gene402	NA	NA
UHGV-1519006_21	Structural annotation	PF09646, COG3167	NA	NA
UHGV-1519006_22	PHROG	phrog_158	major tail protein	tail
UHGV-1519006_22	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-1519006_22	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-1519006_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1519006_23	UniRef90	UniRef90_UPI0006B5085E	NA	NA
UHGV-1519006_23	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-1519006_23	Pfam	PF19591	NA	DUF6096
UHGV-1519006_23	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1519006_24	PHROG	phrog_2066	NA	unknown function
UHGV-1519006_24	eggNOG-mapper	702450.CUW_0542	NA	NA
UHGV-1519006_25	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-1519006_25	PHROG	phrog_23464	NA	unknown function
UHGV-1519006_25	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1519006_25	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1519006_25	COG	COG5283	Phage-related tail protein	NA
UHGV-1519006_26	Pfam	PF20458	NA	DUF6711
UHGV-1519006_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1519006_27	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1519006_28	PHROG	phrog_372	tail protein	tail
UHGV-1519006_28	UniRef90	UniRef90_A0A3S0TER0	Collar domain-containing protein	NA
UHGV-1519006_28	eggNOG-mapper	478749.BRYFOR_08510	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1519006_28	COG	COG4926	Phage-related protein	NA
UHGV-1519006_29	PHROG	phrog_9428	NA	unknown function
UHGV-1519006_29	UniRef90	UniRef90_UPI001AB0523D	serine/threonine protein kinase	NA
UHGV-1519006_29	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-1519006_30	PHROG	phrog_13256	NA	unknown function
UHGV-1519006_30	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-1519006_32	KOfam	K16850	uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]	NA
UHGV-1519006_32	UniRef90	UniRef90_A0A2K2TW05	Carbohydrate hydrolase	NA
UHGV-1519006_32	eggNOG-mapper	1226322.HMPREF1545_04279	D-galactarate dehydratase / Altronate hydrolase, C terminus	NA
UHGV-1519006_32	Pfam	PF04295	D-galactarate dehydratase/Altronate hydrolase, second domain	GD_AH_second
UHGV-1519006_32	Pfam	PF20629	D-galactarate/Altronate dehydratase, C-terminal	GD_AH_C
UHGV-1519006_32	COG	COG2721	Altronate dehydratase	NA