UHGV-1519656

Genome information

Genome length 31,566 bps

CDS count 48

Completeness 68.68% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1519656
vOTU ID	vOTU-022809
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0234038
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.72
Jumbo phage	No

Genome content
Genome length	31,566 bps
GC content	50.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.25%
Average CDS length	603.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1519656_1	PHROG	phrog_1485	NA	unknown function
UHGV-1519656_1	UniRef90	UniRef90_H1CES0	NA	NA
UHGV-1519656_1	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-1519656_1	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1519656_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1519656_2	UniRef90	UniRef90_UPI001899D94E	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-1519656_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1519656_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1519656_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1519656_2	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1519656_3	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1519656_3	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1519656_3	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-1519656_3	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-1519656_3	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1519656_3	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-1519656_4	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1519656_4	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1519656_4	UniRef90	UniRef90_UPI001A9AFBB0	FAD-dependent thymidylate synthase	NA
UHGV-1519656_4	eggNOG-mapper	1235797.C816_01399	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1519656_4	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1519656_4	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1519656_4	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1519656_4	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1519656_6	PHROG	phrog_30550	NA	unknown function
UHGV-1519656_6	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-1519656_6	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1519656_6	Structural annotation	TIGR02869	NA	NA
UHGV-1519656_7	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1519656_7	UniRef90	UniRef90_UPI001899186E	primase C-terminal domain-containing protein	NA
UHGV-1519656_7	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-1519656_7	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1519656_7	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1519656_7	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-1519656_8	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1519656_8	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1519656_8	UniRef90	UniRef90_UPI001D0750B0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1519656_8	eggNOG-mapper	1514668.JOOA01000002_gene2039	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1519656_8	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1519656_8	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1519656_8	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1519656_9	Structural annotation	PF21477	NA	NA
UHGV-1519656_10	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1519656_10	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-1519656_10	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-1519656_10	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1519656_10	Pfam	PF19263	NA	DUF5906
UHGV-1519656_10	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1519656_10	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1519656_10	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1519656_10	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1519656_12	Structural annotation	PF16533, COG5420	NA	NA
UHGV-1519656_13	PHROG	phrog_38239	NA	unknown function
UHGV-1519656_13	UniRef90	UniRef90_A0A3A9H6H8	Ferredoxin:thioredoxin reductase	NA
UHGV-1519656_13	eggNOG-mapper	869209.Tresu_0820	Ferredoxin thioredoxin reductase catalytic beta chain	NA
UHGV-1519656_14	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-1519656_14	UniRef90	UniRef90_A0A318EWY4	Bifunctional protein FolD	NA
UHGV-1519656_14	eggNOG-mapper	400682.PAC_15723437	formate-tetrahydrofolate ligase activity	NA
UHGV-1519656_14	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-1519656_14	COG	COG2759	Formyltetrahydrofolate synthetase	NA
UHGV-1519656_15	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1519656_15	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-1519656_15	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-1519656_15	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1519656_15	Structural annotation	PF16677	NA	NA
UHGV-1519656_16	PHROG	phrog_4264	NA	unknown function
UHGV-1519656_19	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-1519656_19	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-1519656_20	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1519656_20	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1519656_20	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-1519656_20	eggNOG-mapper	1280692.AUJL01000043_gene3363	Resolvase, N terminal domain	NA
UHGV-1519656_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1519656_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1519656_20	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-1519656_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1519656_22	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-1519656_22	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1519656_22	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1519656_22	COG	COG5410	NA	NA
UHGV-1519656_22	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1519656_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1519656_23	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-1519656_23	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1519656_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1519656_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1519656_25	eggNOG-mapper	35344.A0A097PAW3_BPT12	NA	NA
UHGV-1519656_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-1519656_26	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1519656_26	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1519656_26	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1519656_27	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1519656_27	UniRef90	UniRef90_UPI001C3B0F73	Termination factor Rho	NA
UHGV-1519656_27	eggNOG-mapper	1033743.CAES01000020_gene3138	NA	NA
UHGV-1519656_28	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-1519656_28	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1519656_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1519656_28	Structural annotation	TIGR01560	NA	NA
UHGV-1519656_29	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-1519656_30	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1519656_31	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1519656_32	PHROG	phrog_158	major tail protein	tail
UHGV-1519656_32	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-1519656_32	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1519656_32	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1519656_33	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-1519656_33	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1519656_33	Pfam	PF16478	NA	DUF5055
UHGV-1519656_33	Structural annotation	PF16478	NA	NA
UHGV-1519656_34	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1519656_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1519656_35	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1519656_35	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1519656_36	PHROG	phrog_1194	NA	unknown function
UHGV-1519656_36	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1519656_36	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1519656_37	PHROG	phrog_13879	NA	unknown function
UHGV-1519656_37	eggNOG-mapper	1408415.JHXL01000001_gene402	NA	NA
UHGV-1519656_37	Structural annotation	PF06588, TIGR01646, COG3500	NA	NA
UHGV-1519656_38	PHROG	phrog_13879	NA	unknown function
UHGV-1519656_38	eggNOG-mapper	665956.HMPREF1032_03055	NA	NA
UHGV-1519656_39	PHROG	phrog_18725	NA	unknown function
UHGV-1519656_39	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1519656_40	PHROG	phrog_37900	NA	unknown function
UHGV-1519656_40	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-1519656_40	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1519656_40	Pfam	PF19789	NA	DUF6273
UHGV-1519656_40	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1519656_40	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-1519656_41	PHROG	phrog_30516	NA	unknown function
UHGV-1519656_41	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1519656_42	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1519656_42	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1519656_42	UniRef90	UniRef90_UPI00164D8919	RNA-directed DNA polymerase	NA
UHGV-1519656_42	eggNOG-mapper	521003.COLINT_02359	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1519656_42	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1519656_42	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1519656_42	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1519656_42	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1519656_43	PHROG	phrog_30034	NA	unknown function
UHGV-1519656_43	UniRef90	UniRef90_UPI00195DC869	chitinase	NA
UHGV-1519656_43	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-1519656_43	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1519656_44	PHROG	phrog_1863	NA	unknown function
UHGV-1519656_44	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1519656_46	PHROG	phrog_14030	NA	unknown function
UHGV-1519656_46	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-1519656_46	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1519656_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1519656_46	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA