UHGV-1522913

Genome information

Genome length 27,933 bps

CDS count 52

Completeness 95.09% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1522913
vOTU ID	vOTU-013905
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0260683
BioSample	SAMEA2042834
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.79
Jumbo phage	No

Genome content
Genome length	27,933 bps
GC content	27.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.94%
Average CDS length	513.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1522913_1	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1522913_1	PHROG	phrog_291	endolysin	lysis
UHGV-1522913_1	UniRef90	UniRef90_UPI0008352C2B	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1522913_1	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-1522913_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1522913_1	Pfam	PF01476	LysM domain	LysM
UHGV-1522913_1	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-1522913_1	COG	COG1388	LysM repeat	NA
UHGV-1522913_1	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1522913_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1522913_3	PHROG	phrog_4105	NA	unknown function
UHGV-1522913_3	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1522913_4	Pfam	PF21454	Major structural protein 1, jelly-roll domain	MSP1_barrel
UHGV-1522913_6	eggNOG-mapper	1230342.CTM_17037	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1522913_7	PHROG	phrog_24267	NA	unknown function
UHGV-1522913_7	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-1522913_7	eggNOG-mapper	35344.A0A097PAT0_BPT12	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1522913_8	PHROG	phrog_24267	NA	unknown function
UHGV-1522913_8	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-1522913_8	eggNOG-mapper	759913.SDSE_1498	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1522913_8	COG	COG4675	Phage tail collar domain	NA
UHGV-1522913_8	Structural annotation	COG4675	NA	NA
UHGV-1522913_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-1522913_10	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-1522913_10	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1522913_10	Structural annotation	PF20747, PF02839	NA	NA
UHGV-1522913_11	PHROG	phrog_538	minor tail protein	tail
UHGV-1522913_11	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1522913_11	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1522913_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1522913_11	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-1522913_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1522913_12	UniRef90	UniRef90_R5LJU7	Putative phage tail protein	NA
UHGV-1522913_12	eggNOG-mapper	1120746.CCNL01000017_gene2787	NA	NA
UHGV-1522913_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1522913_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1522913_12	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1522913_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1522913_13	UniRef90	UniRef90_A0A174WW30	Phage-related protein	NA
UHGV-1522913_13	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-1522913_13	Pfam	PF04261	Dyp-type peroxidase, N-terminal	Dyp_perox_N
UHGV-1522913_13	COG	COG1511	NA	NA
UHGV-1522913_13	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1522913_14	PHROG	phrog_88	major tail protein	tail
UHGV-1522913_14	UniRef90	UniRef90_A0A7V6Y5X1	Phage tail protein	NA
UHGV-1522913_14	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1522913_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1522913_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1522913_15	PHROG	phrog_78	tail terminator	connector
UHGV-1522913_15	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-1522913_15	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1522913_16	UniRef90	UniRef90_UPI001CCAE8C8	HK97 gp10 family phage protein	NA
UHGV-1522913_16	eggNOG-mapper	1145276.T479_12225	NA	NA
UHGV-1522913_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1522913_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1522913_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1522913_17	UniRef90	UniRef90_A0A4R3N8W9	SPP1 family predicted phage head-tail adaptor	NA
UHGV-1522913_17	eggNOG-mapper	573061.Clocel_2434	head-tail adaptor	NA
UHGV-1522913_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1522913_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1522913_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1522913_18	PHROG	phrog_5223	neck protein	connector
UHGV-1522913_18	Structural annotation	TIGR01560	NA	NA
UHGV-1522913_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1522913_19	UniRef90	UniRef90_A0A316PXV5	Phage major capsid protein	NA
UHGV-1522913_19	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-1522913_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1522913_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1522913_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1522913_20	KOfam	K06904	NA	NA
UHGV-1522913_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1522913_20	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-1522913_20	eggNOG-mapper	767817.Desgi_0032	Phage prohead protease, HK97 family	NA
UHGV-1522913_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1522913_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1522913_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1522913_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1522913_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1522913_21	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-1522913_21	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1522913_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1522913_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1522913_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1522913_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1522913_22	UniRef90	UniRef90_W9E9N7	Terminase	NA
UHGV-1522913_22	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1522913_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1522913_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1522913_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1522913_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1522913_23	PHROG	phrog_1066	NA	unknown function
UHGV-1522913_23	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-1522913_23	eggNOG-mapper	411465.PEPMIC_00731	NA	NA
UHGV-1522913_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1522913_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1522913_24	UniRef90	UniRef90_UPI0009EEE073	HNH endonuclease	NA
UHGV-1522913_24	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-1522913_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1522913_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1522913_27	Structural annotation	PF11836	NA	NA
UHGV-1522913_29	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1522913_29	UniRef90	UniRef90_A0A3D1PL14	HNH endonuclease	NA
UHGV-1522913_29	eggNOG-mapper	796940.HMPREF9628_00161	HNH endonuclease	NA
UHGV-1522913_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1522913_29	Structural annotation	PF13392	NA	NA
UHGV-1522913_30	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1522913_30	eggNOG-mapper	1134413.ANNK01000054_gene2223	NA	NA
UHGV-1522913_30	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1522913_33	PHROG	phrog_3886	NA	unknown function
UHGV-1522913_33	eggNOG-mapper	1497679.EP56_05675	NA	NA
UHGV-1522913_34	KOfam	K03744	lemA; LemA protein	NA
UHGV-1522913_34	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1522913_34	UniRef90	UniRef90_A0A1Q6M2C0	LemA family protein	NA
UHGV-1522913_34	eggNOG-mapper	1497679.EP56_05670	LemA family	NA
UHGV-1522913_34	Pfam	PF04011	LemA family	LemA
UHGV-1522913_34	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1522913_34	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1522913_35	Structural annotation	PF16535, PF04545	NA	NA
UHGV-1522913_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1522913_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1522913_42	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-1522913_42	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1522913_42	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1522913_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1522913_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1522913_42	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1522913_47	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1522913_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1522913_47	UniRef90	UniRef90_A0A4Y9AAG1	DnaD domain protein	NA
UHGV-1522913_47	eggNOG-mapper	558169.AGAV01000001_gene3326	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1522913_47	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1522913_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1522913_47	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1522913_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1522913_47	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1522913_49	PHROG	phrog_4973	NA	unknown function
UHGV-1522913_49	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-1522913_49	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1522913_49	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1522913_52	UniRef90	UniRef90_UPI0005DAFE74	NA	NA
UHGV-1522913_52	eggNOG-mapper	1215915.BN193_09250	NA	NA
UHGV-1522913_52	Pfam	PF05339	NA	DUF739
UHGV-1522913_52	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1522913_52	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA