UHGV-1523164

Genome information

vOTU vOTU-019171

Genome length 52,809 bps

CDS count 77

Completeness 83.43% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-1523164
vOTU ID	vOTU-019171
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0328639
BioSample	SAMEA2580294
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.99
Jumbo phage	No

Genome content
Genome length	52,809 bps
GC content	49.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	86.26%
Average CDS length	594.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1523164_1	PHROG	phrog_2645	major tail protein	tail
UHGV-1523164_1	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-1523164_1	eggNOG-mapper	742733.HMPREF9469_05026	NA	NA
UHGV-1523164_1	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1523164_2	UniRef90	UniRef90_A0A7T0M227	Tail terminator	NA
UHGV-1523164_2	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-1523164_2	Structural annotation	PF20765	NA	NA
UHGV-1523164_3	PHROG	phrog_4270	NA	unknown function
UHGV-1523164_3	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-1523164_3	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1523164_5	KOfam	K06904	NA	NA
UHGV-1523164_5	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1523164_5	UniRef90	UniRef90_A0A4D7ALM8	Caudovirus prohead protease	NA
UHGV-1523164_5	eggNOG-mapper	428125.CLOLEP_01412	Caudovirus prohead serine protease	NA
UHGV-1523164_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1523164_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-1523164_6	UniRef90	UniRef90_UPI00137A2D27	phage portal protein	NA
UHGV-1523164_6	eggNOG-mapper	742733.HMPREF9469_05032	Phage portal protein	NA
UHGV-1523164_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1523164_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1523164_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1523164_7	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-1523164_7	eggNOG-mapper	665956.HMPREF1032_00672	Phage Terminase	NA
UHGV-1523164_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1523164_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1523164_7	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1523164_8	PHROG	phrog_32444	NA	unknown function
UHGV-1523164_8	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-1523164_9	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-1523164_9	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-1523164_9	eggNOG-mapper	742740.HMPREF9474_02274	NA	NA
UHGV-1523164_10	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1523164_10	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-1523164_11	PHROG	phrog_4259	NA	unknown function
UHGV-1523164_11	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-1523164_11	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-1523164_12	PHROG	phrog_4303	NA	unknown function
UHGV-1523164_12	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-1523164_13	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1523164_13	UniRef90	UniRef90_UPI001D0707D9	helix-turn-helix domain-containing protein	NA
UHGV-1523164_13	eggNOG-mapper	742740.HMPREF9474_02278	NA	NA
UHGV-1523164_13	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1523164_13	Structural annotation	PF05183	NA	NA
UHGV-1523164_14	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1523164_14	UniRef90	UniRef90_A0A4D7AY23	NA	NA
UHGV-1523164_14	eggNOG-mapper	411460.RUMTOR_01357	NA	NA
UHGV-1523164_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1523164_15	eggNOG-mapper	742733.HMPREF9469_05041	NA	NA
UHGV-1523164_15	Structural annotation	PF01870, COG1591	NA	NA
UHGV-1523164_16	eggNOG-mapper	1226325.HMPREF1548_00774	NA	NA
UHGV-1523164_17	PHROG	phrog_6568	NA	unknown function
UHGV-1523164_17	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-1523164_21	PHROG	phrog_9958	NA	unknown function
UHGV-1523164_21	UniRef90	UniRef90_T0J799	NA	NA
UHGV-1523164_21	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-1523164_21	Structural annotation	PF19789	NA	NA
UHGV-1523164_22	PHROG	phrog_18984	NA	unknown function
UHGV-1523164_22	eggNOG-mapper	742740.HMPREF9474_02296	NA	NA
UHGV-1523164_24	PHROG	phrog_24386	NA	unknown function
UHGV-1523164_24	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-1523164_24	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-1523164_24	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-1523164_25	Structural annotation	PF21744, TIGR02861	NA	NA
UHGV-1523164_26	Structural annotation	PF21743	NA	NA
UHGV-1523164_30	PHROG	phrog_6721	NA	unknown function
UHGV-1523164_30	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-1523164_30	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1523164_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1523164_34	UniRef90	UniRef90_A0A4D7AM36	DEAD/DEAH box helicase family protein	NA
UHGV-1523164_34	eggNOG-mapper	665956.HMPREF1032_00650	Helicase conserved C-terminal domain	NA
UHGV-1523164_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1523164_34	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-1523164_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1523164_35	PHROG	phrog_5696	NA	unknown function
UHGV-1523164_35	UniRef90	UniRef90_UPI001D088CFF	N-6 DNA methylase	NA
UHGV-1523164_35	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-1523164_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1523164_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1523164_35	Structural annotation	PF05185, TIGR00497	NA	NA
UHGV-1523164_36	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1523164_36	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-1523164_36	eggNOG-mapper	428125.CLOLEP_01377	NA	NA
UHGV-1523164_36	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1523164_37	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1523164_37	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1523164_37	UniRef90	UniRef90_UPI001D0613C6	NA	NA
UHGV-1523164_37	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-1523164_37	Pfam	PF19263	NA	DUF5906
UHGV-1523164_37	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-1523164_39	PHROG	phrog_4678	NA	unknown function
UHGV-1523164_39	eggNOG-mapper	742733.HMPREF9469_05069	NA	NA
UHGV-1523164_40	PHROG	phrog_4695	NA	unknown function
UHGV-1523164_40	UniRef90	UniRef90_UPI001D08D232	YtxH domain-containing protein	NA
UHGV-1523164_40	eggNOG-mapper	411460.RUMTOR_02032	NA	NA
UHGV-1523164_41	PHROG	phrog_14968	NA	unknown function
UHGV-1523164_41	UniRef90	UniRef90_A0A4D7ALQ3	Histidine kinase	NA
UHGV-1523164_41	eggNOG-mapper	742740.HMPREF9474_02308	NA	NA
UHGV-1523164_43	PHROG	phrog_30550	NA	unknown function
UHGV-1523164_43	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-1523164_43	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1523164_43	Structural annotation	TIGR02869	NA	NA
UHGV-1523164_44	PHROG	phrog_2152	NA	unknown function
UHGV-1523164_44	UniRef90	UniRef90_UPI001D085778	NA	NA
UHGV-1523164_44	eggNOG-mapper	411460.RUMTOR_02029	NA	NA
UHGV-1523164_44	Pfam	PF19880	NA	DUF6353
UHGV-1523164_44	Structural annotation	PF19880	NA	NA
UHGV-1523164_45	PHROG	phrog_474	phosphofructokinase	other
UHGV-1523164_45	UniRef90	UniRef90_A0A1Y4SQK6	NA	NA
UHGV-1523164_45	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-1523164_45	Pfam	PF19905	NA	DUF6378
UHGV-1523164_45	Structural annotation	PF19905	NA	NA
UHGV-1523164_46	PHROG	phrog_4079	NA	unknown function
UHGV-1523164_46	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-1523164_47	PHROG	phrog_15567	NA	unknown function
UHGV-1523164_47	eggNOG-mapper	742733.HMPREF9469_05077	NA	NA
UHGV-1523164_47	Structural annotation	MF_00273, NF001981	NA	NA
UHGV-1523164_49	PHROG	phrog_2152	NA	unknown function
UHGV-1523164_49	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-1523164_49	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-1523164_49	Pfam	PF19880	NA	DUF6353
UHGV-1523164_49	Structural annotation	PF19880	NA	NA
UHGV-1523164_51	PHROG	phrog_10740	NA	unknown function
UHGV-1523164_51	eggNOG-mapper	742733.HMPREF9469_05081	NA	NA
UHGV-1523164_51	Structural annotation	PF20930	NA	NA
UHGV-1523164_52	PHROG	phrog_19711	NA	unknown function
UHGV-1523164_52	eggNOG-mapper	742740.HMPREF9474_02317	NA	NA
UHGV-1523164_53	PHROG	phrog_2152	NA	unknown function
UHGV-1523164_53	UniRef90	UniRef90_UPI001D071318	NA	NA
UHGV-1523164_53	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-1523164_53	Pfam	PF19880	NA	DUF6353
UHGV-1523164_53	Structural annotation	PF19880	NA	NA
UHGV-1523164_55	PHROG	phrog_18243	NA	unknown function
UHGV-1523164_55	UniRef90	UniRef90_A0A1Q6KRG1	CTP synthase	NA
UHGV-1523164_55	eggNOG-mapper	428125.CLOLEP_01356	NA	NA
UHGV-1523164_56	PHROG	phrog_17256	NA	unknown function
UHGV-1523164_56	eggNOG-mapper	428125.CLOLEP_01353	NA	NA
UHGV-1523164_57	PHROG	phrog_26488	NA	unknown function
UHGV-1523164_57	UniRef90	UniRef90_UPI001D05FEFD	NA	NA
UHGV-1523164_57	Structural annotation	PF02150, NF041197	NA	NA
UHGV-1523164_58	PHROG	phrog_15866	NA	unknown function
UHGV-1523164_58	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-1523164_59	PHROG	phrog_15309	NA	unknown function
UHGV-1523164_59	UniRef90	UniRef90_UPI00195AF6D9	beta-lactamase induction signal transducer protein	NA
UHGV-1523164_59	eggNOG-mapper	742740.HMPREF9474_02325	NA	NA
UHGV-1523164_60	PHROG	phrog_2834	NA	unknown function
UHGV-1523164_60	UniRef90	UniRef90_UPI001D0639DD	DNA-directed RNA polymerase	NA
UHGV-1523164_60	eggNOG-mapper	428125.CLOLEP_01349	NA	NA
UHGV-1523164_61	PHROG	phrog_11237	NA	unknown function
UHGV-1523164_61	eggNOG-mapper	742733.HMPREF9469_05093	NA	NA
UHGV-1523164_62	PHROG	phrog_6058	NA	unknown function
UHGV-1523164_62	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-1523164_62	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-1523164_64	KOfam	K14059	int; integrase	NA
UHGV-1523164_64	PHROG	phrog_1	integrase	integration and excision
UHGV-1523164_64	UniRef90	UniRef90_H1CCE3	Tyr recombinase domain-containing protein	NA
UHGV-1523164_64	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-1523164_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1523164_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1523164_64	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1523164_70	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1523164_70	PHROG	phrog_95	integrase	integration and excision
UHGV-1523164_70	UniRef90	UniRef90_UPI001413296A	recombinase family protein	NA
UHGV-1523164_70	eggNOG-mapper	411471.SUBVAR_05763	Resolvase, N-terminal domain protein	NA
UHGV-1523164_70	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1523164_70	Pfam	PF07508	Recombinase	Recombinase
UHGV-1523164_70	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1523164_70	Structural annotation	PF07508, PF00239, PF14282, NF041201, COG1961, COG1579	NA	NA
UHGV-1523164_71	UniRef90	UniRef90_A0A174EW17	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1523164_71	eggNOG-mapper	622312.ROSEINA2194_00627	RNA polymerase sigma-24 subunit, ECF subfamily	NA
UHGV-1523164_71	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1523164_72	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-1523164_72	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-1523164_72	UniRef90	UniRef90_A0A174SID6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1523164_72	eggNOG-mapper	742738.HMPREF9460_03222	Sigma-70, region 4	NA
UHGV-1523164_72	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1523164_72	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1523164_72	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1523164_72	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1523164_73	UniRef90	UniRef90_G9YLJ8	NA	NA
UHGV-1523164_73	eggNOG-mapper	742738.HMPREF9460_03221	NA	NA
UHGV-1523164_73	Pfam	PF14285	NA	DUF4367
UHGV-1523164_73	Structural annotation	PF14285, COG5662	NA	NA
UHGV-1523164_74	eggNOG-mapper	742738.HMPREF9460_03220	NA	NA
UHGV-1523164_74	Structural annotation	PF19644, MF_00791, NF007507, COG4326	NA	NA
UHGV-1523164_75	PHROG	phrog_1696	major tail protein	tail
UHGV-1523164_75	UniRef90	UniRef90_A0A1H3MX83	S-layer homology domain-containing protein	NA
UHGV-1523164_75	eggNOG-mapper	1449063.JMLS01000021_gene791	Parallel beta-helix repeats	NA
UHGV-1523164_75	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1523164_75	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-1523164_76	UniRef90	UniRef90_H1CGN4	Amidase_6 domain-containing protein	NA
UHGV-1523164_76	eggNOG-mapper	1235797.C816_03969	Putative amidase domain	NA
UHGV-1523164_76	Pfam	PF12671	Putative amidase domain	Amidase_6