UHGV-1524407

Genome information

Genome length 29,674 bps

CDS count 43

Completeness 79.01% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1524407
vOTU ID	vOTU-036361
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0218290
BioSample	SAMEA4378276
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.22
Jumbo phage	No

Genome content
Genome length	29,674 bps
GC content	31.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	89.77%
Average CDS length	624.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1524407_1	KOfam	K07050	AARSD1, ALAX; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]	NA
UHGV-1524407_1	UniRef90	UniRef90_UPI0005AACFA3	alanyl-tRNA editing protein	NA
UHGV-1524407_1	eggNOG-mapper	500633.CLOHIR_01349	Threonine alanine tRNA ligase second additional domain protein	NA
UHGV-1524407_1	COG	COG0013	Alanyl-tRNA synthetase	NA
UHGV-1524407_2	PHROG	phrog_2329	NA	unknown function
UHGV-1524407_2	UniRef90	UniRef90_A0A7C6Z4D9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1524407_2	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-1524407_2	Structural annotation	PF04014, NF008463, COG2336	NA	NA
UHGV-1524407_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1524407_3	PHROG	phrog_3088	amidase	lysis
UHGV-1524407_3	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-1524407_3	eggNOG-mapper	500633.CLOHIR_00392	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1524407_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1524407_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1524407_4	UniRef90	UniRef90_A0A1H8JG79	Holin, phage phi LC3 family	NA
UHGV-1524407_4	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-1524407_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1524407_4	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1524407_4	COG	COG5546	NA	NA
UHGV-1524407_5	KOfam	K23989	lytD, lytB; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]	NA
UHGV-1524407_5	PHROG	phrog_25820	endolysin	lysis
UHGV-1524407_5	UniRef90	UniRef90_A0A7T8V4Q9	Glucosaminidase domain-containing protein	NA
UHGV-1524407_5	eggNOG-mapper	500633.CLOHIR_01473	domain, Protein	NA
UHGV-1524407_5	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1524407_5	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1524407_7	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-1524407_7	PHROG	phrog_819	tail protein	tail
UHGV-1524407_7	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-1524407_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1524407_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1524407_8	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1524407_8	UniRef90	UniRef90_A0A1T4K5Y3	Phage minor structural protein, N-terminal region	NA
UHGV-1524407_8	eggNOG-mapper	1033733.CAEK01000007_gene1636	Phage minor structural protein	NA
UHGV-1524407_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1524407_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1524407_8	COG	COG4926	Phage-related protein	NA
UHGV-1524407_8	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1524407_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1524407_9	UniRef90	UniRef90_A0A1T4K606	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1524407_9	eggNOG-mapper	938278.CAJO01000051_gene778	NA	NA
UHGV-1524407_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1524407_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1524407_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-1524407_9	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1524407_10	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1524407_10	eggNOG-mapper	1125779.HMPREF1219_00167	heme binding	NA
UHGV-1524407_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1524407_10	COG	COG3953	SLT domain protein	NA
UHGV-1524407_10	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1524407_11	PHROG	phrog_7423	NA	unknown function
UHGV-1524407_11	UniRef90	UniRef90_A0A162F6M2	Phenylalanine racemase	NA
UHGV-1524407_11	eggNOG-mapper	936154.STP_1263	NA	NA
UHGV-1524407_12	UniRef90	UniRef90_Q9K753	BH3520 protein	NA
UHGV-1524407_12	eggNOG-mapper	1347392.CCEZ01000005_gene1242	NA	NA
UHGV-1524407_12	Structural annotation	PF11836	NA	NA
UHGV-1524407_13	PHROG	phrog_1407	major tail protein	tail
UHGV-1524407_13	UniRef90	UniRef90_UPI001C0EFDAD	phage major tail protein, TP901-1 family	NA
UHGV-1524407_13	eggNOG-mapper	272558.10176145	Phage tail tube protein	NA
UHGV-1524407_13	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1524407_13	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1524407_13	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1524407_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1524407_14	PHROG	phrog_176	tail terminator	connector
UHGV-1524407_14	UniRef90	UniRef90_UPI00085C86AC	NA	NA
UHGV-1524407_14	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-1524407_14	Pfam	PF16807	NA	DUF5072
UHGV-1524407_14	Structural annotation	PF16807, COG5003	NA	NA
UHGV-1524407_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1524407_15	UniRef90	UniRef90_R5KJ18	BH3523 protein	NA
UHGV-1524407_15	eggNOG-mapper	272558.10176147	NA	NA
UHGV-1524407_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1524407_16	eggNOG-mapper	1232430.CAVG010000113_gene1018	NA	NA
UHGV-1524407_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1524407_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1524407_17	UniRef90	UniRef90_A0A516KPV2	Putative head-tail connector	NA
UHGV-1524407_17	eggNOG-mapper	936154.STP_1288	NA	NA
UHGV-1524407_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1524407_17	Structural annotation	PF05135	NA	NA
UHGV-1524407_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-1524407_18	UniRef90	UniRef90_A0A847D7U9	Big_12 domain-containing protein	NA
UHGV-1524407_18	eggNOG-mapper	1232430.CAVG010000113_gene1021	NA	NA
UHGV-1524407_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1524407_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1524407_19	UniRef90	UniRef90_UPI000BE8EE50	NA	NA
UHGV-1524407_19	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-1524407_19	Pfam	PF14265	NA	DUF4355
UHGV-1524407_19	Structural annotation	PF14265	NA	NA
UHGV-1524407_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1524407_21	UniRef90	UniRef90_A0A2N6SUF2	Phage_Mu_F domain-containing protein	NA
UHGV-1524407_21	eggNOG-mapper	936154.STP_1290	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1524407_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1524407_21	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1524407_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1524407_21	COG	COG2369	NA	NA
UHGV-1524407_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1524407_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1524407_22	UniRef90	UniRef90_UPI001D15C504	phage portal protein	NA
UHGV-1524407_22	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1524407_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1524407_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1524407_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1524407_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1524407_23	PHROG	phrog_6672	terminase large subunit	head and packaging
UHGV-1524407_23	UniRef90	UniRef90_UPI001C81B45D	terminase large subunit	NA
UHGV-1524407_23	eggNOG-mapper	1347392.CCEZ01000005_gene1229	Phage terminase, large subunit, PBSX family	NA
UHGV-1524407_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1524407_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1524407_23	Structural annotation	PF17288, TIGR01547, COG5362	NA	NA
UHGV-1524407_24	UniRef90	UniRef90_UPI0015E874F4	GIY-YIG nuclease family protein	NA
UHGV-1524407_24	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1524407_24	Pfam	PF13338	Transcriptional regulator, AbiEi antitoxin	AbiEi_4
UHGV-1524407_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1524407_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1524407_25	UniRef90	UniRef90_A0A380E2K8	Phage-associated terminase large subunit	NA
UHGV-1524407_25	eggNOG-mapper	1347392.CCEZ01000005_gene1229	Phage terminase, large subunit, PBSX family	NA
UHGV-1524407_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1524407_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1524407_25	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-1524407_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1524407_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1524407_26	UniRef90	UniRef90_A0A7T8V4X5	Terminase small subunit	NA
UHGV-1524407_26	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-1524407_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1524407_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1524407_26	Structural annotation	PF03592	NA	NA
UHGV-1524407_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1524407_27	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-1524407_27	Pfam	PF07374	NA	DUF1492
UHGV-1524407_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1524407_27	Structural annotation	PF08281, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-1524407_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1524407_28	UniRef90	UniRef90_UPI00189A5C86	NA	NA
UHGV-1524407_28	eggNOG-mapper	500633.CLOHIR_01441	NA	NA
UHGV-1524407_28	Pfam	PF06356	NA	DUF1064
UHGV-1524407_28	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-1524407_29	UniRef90	UniRef90_B6FZY6	MazG domain-containing protein	NA
UHGV-1524407_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1524407_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1524407_32	UniRef90	UniRef90_A0A7T8ZRW5	Single-stranded DNA-binding protein	NA
UHGV-1524407_32	eggNOG-mapper	1121324.CLIT_4c02010	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1524407_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1524407_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1524407_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1524407_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1524407_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1524407_33	PHROG	phrog_35669	NA	unknown function
UHGV-1524407_34	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1524407_34	dbAPIS	APIS049	NA	NA
UHGV-1524407_37	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-1524407_37	UniRef90	UniRef90_UPI00164DD6A2	replication protein	NA
UHGV-1524407_37	eggNOG-mapper	272563.CD630_09180	DnaD domain protein	NA
UHGV-1524407_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1524407_37	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-1524407_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1524407_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1524407_38	UniRef90	UniRef90_A0A7T8V4J9	Recombination protein RecT	NA
UHGV-1524407_38	eggNOG-mapper	1292035.H476_1031	RecT family	NA
UHGV-1524407_38	Pfam	PF03837	RecT family	RecT
UHGV-1524407_38	NCBIFam	NF007351.0	recombination protein RecT	NA
UHGV-1524407_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1524407_38	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1524407_39	eggNOG-mapper	1292035.H476_1032	YqaJ viral recombinase family	NA
UHGV-1524407_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1524407_40	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1524407_40	UniRef90	UniRef90_A0A7T8V4S7	YqaJ viral recombinase family protein	NA
UHGV-1524407_40	eggNOG-mapper	1292035.H476_1032	YqaJ viral recombinase family	NA
UHGV-1524407_40	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1524407_40	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1524407_40	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1524407_40	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA