UHGV-1524438

Genome information

Genome length 29,070 bps

CDS count 50

Completeness 85.98% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-1524438
vOTU ID	vOTU-021318
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0216522
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.17
Jumbo phage	No

Genome content
Genome length	29,070 bps
GC content	38.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.30%
Average CDS length	538.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1524438_1	PHROG	phrog_1129	holin	lysis
UHGV-1524438_1	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-1524438_1	eggNOG-mapper	1140002.I570_01426	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1524438_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1524438_1	Structural annotation	PF06946	NA	NA
UHGV-1524438_2	PHROG	phrog_1863	NA	unknown function
UHGV-1524438_2	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA
UHGV-1524438_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-1524438_5	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-1524438_5	eggNOG-mapper	936375.HMPREF1152_0017	NA	NA
UHGV-1524438_5	Structural annotation	PF20747	NA	NA
UHGV-1524438_6	PHROG	phrog_538	minor tail protein	tail
UHGV-1524438_6	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1524438_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1524438_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1524438_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1524438_7	UniRef90	UniRef90_J5WFT7	Phage tail domain protein	NA
UHGV-1524438_7	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1524438_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1524438_8	UniRef90	UniRef90_A0A4D5ZXV4	Putative tail protein	NA
UHGV-1524438_8	eggNOG-mapper	936375.HMPREF1152_0688	nuclear chromosome segregation	NA
UHGV-1524438_8	COG	COG1511	NA	NA
UHGV-1524438_8	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1524438_9	PHROG	phrog_1633	NA	unknown function
UHGV-1524438_9	UniRef90	UniRef90_UPI001CD757D3	NA	NA
UHGV-1524438_9	eggNOG-mapper	936375.HMPREF1152_0687	NA	NA
UHGV-1524438_9	Pfam	PF17318	NA	DUF5361
UHGV-1524438_10	PHROG	phrog_1526	NA	unknown function
UHGV-1524438_10	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-1524438_11	PHROG	phrog_117	major tail protein	tail
UHGV-1524438_11	UniRef90	UniRef90_A0A2S0L5R7	Phage tail protein	NA
UHGV-1524438_11	eggNOG-mapper	936375.HMPREF1152_0685	domain, Protein	NA
UHGV-1524438_11	COG	COG5492	NA	NA
UHGV-1524438_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1524438_12	PHROG	phrog_123	tail terminator	connector
UHGV-1524438_12	eggNOG-mapper	936375.HMPREF1152_0684	NA	NA
UHGV-1524438_12	Structural annotation	PF06141	NA	NA
UHGV-1524438_13	PHROG	phrog_387	neck protein	connector
UHGV-1524438_13	UniRef90	UniRef90_A0A139NAV7	Phage-associated protein	NA
UHGV-1524438_13	eggNOG-mapper	936375.HMPREF1152_0683	NA	NA
UHGV-1524438_14	PHROG	phrog_501	head closure Hc1	connector
UHGV-1524438_14	UniRef90	UniRef90_A0A0E3WFP3	NA	NA
UHGV-1524438_14	eggNOG-mapper	936375.HMPREF1152_0682	NA	NA
UHGV-1524438_14	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1524438_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1524438_15	UniRef90	UniRef90_J5WG12	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1524438_15	eggNOG-mapper	936375.HMPREF1152_0681	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1524438_15	Pfam	PF09355	NA	Phage_Gp19
UHGV-1524438_15	Structural annotation	PF09355	NA	NA
UHGV-1524438_17	PHROG	phrog_32396	NA	unknown function
UHGV-1524438_17	UniRef90	UniRef90_A0A2S0L5I3	Phage major capsid protein	NA
UHGV-1524438_17	eggNOG-mapper	936375.HMPREF1152_0679	Phage capsid family	NA
UHGV-1524438_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1524438_18	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-1524438_18	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-1524438_18	eggNOG-mapper	936375.HMPREF1152_0678	NA	NA
UHGV-1524438_18	Pfam	PF14265	NA	DUF4355
UHGV-1524438_18	Structural annotation	PF14265	NA	NA
UHGV-1524438_19	PHROG	phrog_17688	NA	unknown function
UHGV-1524438_19	UniRef90	UniRef90_A0A2S0L5I4	Terminase	NA
UHGV-1524438_19	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-1524438_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1524438_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1524438_19	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1524438_20	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-1524438_20	UniRef90	UniRef90_J5WFW3	CdiA_C domain-containing protein	NA
UHGV-1524438_20	eggNOG-mapper	936375.HMPREF1152_0675	NA	NA
UHGV-1524438_20	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1524438_20	Structural annotation	PF18451, TIGR01641	NA	NA
UHGV-1524438_21	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-1524438_21	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-1524438_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-1524438_22	UniRef90	UniRef90_J6HG04	SPP1 Gp6-like phage portal protein	NA
UHGV-1524438_22	eggNOG-mapper	936375.HMPREF1152_0673	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1524438_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1524438_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1524438_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1524438_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1524438_23	UniRef90	UniRef90_A0A2S0L5K1	HNHc domain-containing protein	NA
UHGV-1524438_23	eggNOG-mapper	936375.HMPREF1152_0672	HNH endonuclease domain protein	NA
UHGV-1524438_23	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1524438_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1524438_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1524438_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1524438_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1524438_24	UniRef90	UniRef90_J5WFY5	PF07374 family protein	NA
UHGV-1524438_24	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-1524438_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1524438_24	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1524438_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1524438_25	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-1524438_25	eggNOG-mapper	936375.HMPREF1152_0670	NA	NA
UHGV-1524438_25	Structural annotation	PF21578	NA	NA
UHGV-1524438_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1524438_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1524438_27	UniRef90	UniRef90_A0A2S0L5J3	Single-stranded DNA-binding protein	NA
UHGV-1524438_27	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1524438_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1524438_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1524438_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1524438_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1524438_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1524438_28	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1524438_28	UniRef90	UniRef90_A0A2S0L5I7	MazG domain-containing protein	NA
UHGV-1524438_28	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1524438_31	PHROG	phrog_15609	NA	unknown function
UHGV-1524438_31	UniRef90	UniRef90_J4W6X5	PF11300 family protein	NA
UHGV-1524438_31	eggNOG-mapper	936375.HMPREF1152_0669	NA	NA
UHGV-1524438_31	Pfam	PF11300	NA	DUF3102
UHGV-1524438_31	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-1524438_31	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1524438_32	PHROG	phrog_8470	NA	unknown function
UHGV-1524438_32	UniRef90	UniRef90_J6H8Z2	PcfJ-like protein	NA
UHGV-1524438_32	eggNOG-mapper	936375.HMPREF1152_0668	PcfJ-like protein	NA
UHGV-1524438_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1524438_32	Structural annotation	PF14284	NA	NA
UHGV-1524438_33	PHROG	phrog_7445	NA	unknown function
UHGV-1524438_33	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1524438_33	Structural annotation	PF14058	NA	NA
UHGV-1524438_35	PHROG	phrog_7566	NA	unknown function
UHGV-1524438_40	Structural annotation	NF040990	NA	NA
UHGV-1524438_41	PHROG	phrog_3202	NA	unknown function
UHGV-1524438_41	UniRef90	UniRef90_UPI000A03AC7F	YjzC family protein	NA
UHGV-1524438_41	eggNOG-mapper	638301.HMPREF0444_1536	YjzC-like protein	NA
UHGV-1524438_41	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-1524438_41	Structural annotation	PF14168	NA	NA
UHGV-1524438_42	PHROG	phrog_10400	NA	unknown function
UHGV-1524438_42	eggNOG-mapper	12402.Q708Q9_9CAUD	NA	NA
UHGV-1524438_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1524438_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1524438_46	UniRef90	UniRef90_A0A2S0L5M3	XRE family transcriptional regulator	NA
UHGV-1524438_46	eggNOG-mapper	1235794.C811_02109	DNA-binding helix-turn-helix protein	NA
UHGV-1524438_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1524438_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1524438_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1524438_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1524438_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1524438_47	UniRef90	UniRef90_A0A2S0L5R2	HTH cro/C1-type domain-containing protein	NA
UHGV-1524438_47	eggNOG-mapper	936375.HMPREF1152_0654	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1524438_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1524438_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1524438_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1524438_47	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1524438_48	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1524438_48	UniRef90	UniRef90_UPI001C2DB3E6	putative DNA binding domain-containing protein	NA
UHGV-1524438_48	eggNOG-mapper	1485543.JMME01000008_gene659	Putative DNA-binding domain	NA
UHGV-1524438_48	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-1524438_48	Pfam	PF13749	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
UHGV-1524438_48	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-1524438_48	Structural annotation	PF04703, MF_01819, NF033788, NF033091, COG2865	NA	NA
UHGV-1524438_49	KOfam	K14059	int; integrase	NA
UHGV-1524438_49	PHROG	phrog_1	integrase	integration and excision
UHGV-1524438_49	UniRef90	UniRef90_A0A2S0L5I5	Tyr recombinase domain-containing protein	NA
UHGV-1524438_49	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1524438_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1524438_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1524438_49	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA