UHGV-1525565

Genome information

vOTU vOTU-022039

Genome length 58,097 bps

CDS count 112

Completeness 53.16% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-1525565
vOTU ID	vOTU-022039
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0334163
BioSample	SAMN06112064
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.87
Jumbo phage	No

Genome content
Genome length	58,097 bps
GC content	35.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	112
CDS density	88.33%
Average CDS length	460.55 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1525565_1	UniRef90	UniRef90_A0A373KMG1	DNA-binding protein	NA
UHGV-1525565_1	eggNOG-mapper	1519439.JPJG01000053_gene1351	Helix-turn-helix domain	NA
UHGV-1525565_1	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1525565_1	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1525565_1	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1525565_1	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1525565_3	PHROG	phrog_2107	thymidylate kinase	other
UHGV-1525565_3	UniRef90	UniRef90_A0A415ZYI9	AAA_28 domain-containing protein	NA
UHGV-1525565_3	eggNOG-mapper	713586.KB900537_gene3221	Involved in chromosome partitioning	NA
UHGV-1525565_3	Pfam	PF13521	AAA domain	AAA_28
UHGV-1525565_3	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1525565_3	Structural annotation	PF13521, MF_01269, NF005923, COG3172	NA	NA
UHGV-1525565_5	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1525565_5	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1525565_5	UniRef90	UniRef90_A0A373KP38	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1525565_5	eggNOG-mapper	877420.ATVW01000001_gene2133	dUTPase	NA
UHGV-1525565_5	Pfam	PF00692	dUTPase	dUTPase
UHGV-1525565_5	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1525565_5	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1525565_6	PHROG	phrog_1649	metallo-phosphoesterase	other
UHGV-1525565_6	UniRef90	UniRef90_A0A373KN38	Metallophos domain-containing protein	NA
UHGV-1525565_6	eggNOG-mapper	537007.BLAHAN_05396	acid phosphatase activity	NA
UHGV-1525565_6	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1525565_6	Structural annotation	PF14582, MF_00905, TIGR03729, COG2129	NA	NA
UHGV-1525565_7	PHROG	phrog_1828	NA	unknown function
UHGV-1525565_7	eggNOG-mapper	226185.EF_1445	NA	NA
UHGV-1525565_8	UniRef90	UniRef90_A0A1Q6V1V0	NA	NA
UHGV-1525565_8	Structural annotation	PF20037	NA	NA
UHGV-1525565_9	PHROG	phrog_419	NA	unknown function
UHGV-1525565_9	eggNOG-mapper	1298920.KI911353_gene2655	NA	NA
UHGV-1525565_9	Structural annotation	PF14083	NA	NA
UHGV-1525565_11	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1525565_11	UniRef90	UniRef90_A0A373KMH1	NAD(P)-dependent oxidoreductase	NA
UHGV-1525565_11	eggNOG-mapper	1236504.HMPREF2132_11055	DNA restriction-modification system	NA
UHGV-1525565_11	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1525565_11	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1525565_12	PHROG	phrog_548	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1525565_12	UniRef90	UniRef90_A0A373KPG0	RNA_ligase domain-containing protein	NA
UHGV-1525565_12	eggNOG-mapper	1163671.JAGI01000002_gene1302	RNA ligase	NA
UHGV-1525565_12	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-1525565_12	Structural annotation	PF09414, MF_04150, TIGR02306, COG1423	NA	NA
UHGV-1525565_13	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1525565_13	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1525565_13	UniRef90	UniRef90_A0A373KMG8	FAD-dependent thymidylate synthase	NA
UHGV-1525565_13	eggNOG-mapper	1235802.C823_03200	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1525565_13	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1525565_13	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1525565_13	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1525565_15	PHROG	phrog_774	NA	unknown function
UHGV-1525565_15	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1525565_22	PHROG	phrog_322	NA	unknown function
UHGV-1525565_22	UniRef90	UniRef90_UPI000F7ADC69	Gp49 family protein	NA
UHGV-1525565_22	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-1525565_22	Pfam	PF13876	NA	Phage_gp49_66
UHGV-1525565_22	dbAPIS	APIS043	NA	NA
UHGV-1525565_22	Structural annotation	PF13876	NA	NA
UHGV-1525565_23	Structural annotation	PF08848	NA	NA
UHGV-1525565_24	Structural annotation	PF19157	NA	NA
UHGV-1525565_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1525565_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1525565_25	UniRef90	UniRef90_A0A373KQ10	DNA adenine methylase	NA
UHGV-1525565_25	eggNOG-mapper	1416012.V5URG0_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1525565_25	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1525565_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1525565_25	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1525565_26	PHROG	phrog_10455	NA	unknown function
UHGV-1525565_26	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-1525565_27	PHROG	phrog_2717	NA	unknown function
UHGV-1525565_27	eggNOG-mapper	665956.HMPREF1032_01643	NA	NA
UHGV-1525565_28	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-1525565_28	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-1525565_28	UniRef90	UniRef90_A0A373KPI0	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-1525565_28	eggNOG-mapper	1235796.C815_01962	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-1525565_28	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-1525565_28	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-1525565_28	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-1525565_28	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-1525565_29	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-1525565_29	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-1525565_29	UniRef90	UniRef90_R6S393	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1525565_29	eggNOG-mapper	411902.CLOBOL_02823	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1525565_29	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1525565_29	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1525565_29	Structural annotation	PF13597, TIGR02487, COG1328	NA	NA
UHGV-1525565_30	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1525565_30	UniRef90	UniRef90_R6QWW2	Homing endonuclease	NA
UHGV-1525565_30	eggNOG-mapper	1552735.A0A0A7DMT0_9CAUD	HNH endonuclease	NA
UHGV-1525565_30	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1525565_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1525565_30	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1525565_30	Structural annotation	PF07463	NA	NA
UHGV-1525565_31	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-1525565_31	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-1525565_31	UniRef90	UniRef90_A0A373KMX7	ATP-cone domain-containing protein	NA
UHGV-1525565_31	eggNOG-mapper	411902.CLOBOL_02823	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1525565_31	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-1525565_31	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1525565_31	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1525565_31	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-1525565_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1525565_32	UniRef90	UniRef90_A0A373KMJ8	NA	NA
UHGV-1525565_32	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-1525565_32	Pfam	PF14359	NA	DUF4406
UHGV-1525565_32	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1525565_38	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-1525565_38	PHROG	phrog_1815	guanylate kinase	other
UHGV-1525565_38	UniRef90	UniRef90_A0A373KML1	Guanylate kinase-like domain-containing protein	NA
UHGV-1525565_38	eggNOG-mapper	1262449.CP6013_1905	Guanylate kinase	NA
UHGV-1525565_38	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-1525565_38	COG	COG0194	Guanylate kinase	NA
UHGV-1525565_38	Structural annotation	PF00625, MF_00328, NF011324, COG0194	NA	NA
UHGV-1525565_39	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1525565_39	Structural annotation	TIGR02869, COG3773	NA	NA
UHGV-1525565_41	Structural annotation	PF00381, NF008146	NA	NA
UHGV-1525565_42	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1525565_42	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1525565_42	UniRef90	UniRef90_UPI0018AAE723	PHP domain-containing protein	NA
UHGV-1525565_42	eggNOG-mapper	180332.JTGN01000008_gene4133	DNA-directed DNA polymerase activity	NA
UHGV-1525565_42	Pfam	PF02811	PHP domain	PHP
UHGV-1525565_42	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1525565_42	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1525565_42	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1525565_42	Structural annotation	PF07733, PF17657, PF14579, PF06125, MF_01902, NF005617, COG0587	NA	NA
UHGV-1525565_43	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1525565_43	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1525565_43	UniRef90	UniRef90_A0A355JEF6	SF4 helicase domain-containing protein	NA
UHGV-1525565_43	eggNOG-mapper	247490.KSU1_C0210	Participates in initiation and elongation during chromosome replication	NA
UHGV-1525565_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1525565_43	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1525565_43	Pfam	PF13481	AAA domain	AAA_25
UHGV-1525565_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-1525565_43	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-1525565_44	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1525565_44	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1525565_44	UniRef90	UniRef90_UPI001C0FBAF3	PD-(D/E)XK nuclease family protein	NA
UHGV-1525565_44	eggNOG-mapper	397291.C804_00923	PD-(D/E)XK nuclease superfamily	NA
UHGV-1525565_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1525565_44	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1525565_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1525565_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1525565_45	UniRef90	UniRef90_A0A3M1UCF3	Single-stranded DNA-binding protein	NA
UHGV-1525565_45	eggNOG-mapper	1408422.JHYF01000019_gene1422	Single-stranded DNA-binding protein	NA
UHGV-1525565_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1525565_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1525565_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1525565_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1525565_45	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1525565_46	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1525565_46	UniRef90	UniRef90_UPI001030CD74	NA	NA
UHGV-1525565_46	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1525565_46	Pfam	PF06378	NA	DUF1071
UHGV-1525565_47	PHROG	phrog_5830	integrase	integration and excision
UHGV-1525565_47	Structural annotation	PF00589, MF_01807, NF001399, COG4974	NA	NA
UHGV-1525565_49	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1525565_49	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1525565_49	UniRef90	UniRef90_UPI001C036611	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1525565_49	eggNOG-mapper	573061.Clocel_1267	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1525565_49	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1525565_49	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1525565_54	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-1525565_56	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-1525565_58	eggNOG-mapper	1235800.C819_00821	helicase C-terminal domain protein	NA
UHGV-1525565_58	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-1525565_59	Structural annotation	PF08846	NA	NA
UHGV-1525565_65	PHROG	phrog_35050	NA	unknown function
UHGV-1525565_65	eggNOG-mapper	697329.Rumal_3553	NA	NA
UHGV-1525565_68	PHROG	phrog_5149	NA	unknown function
UHGV-1525565_68	eggNOG-mapper	889204.HMPREF9423_1688	NA	NA
UHGV-1525565_71	eggNOG-mapper	1203606.HMPREF1526_00296	NA	NA
UHGV-1525565_71	Structural annotation	PF09465, MF_00950, TIGR00922, COG0250	NA	NA
UHGV-1525565_83	Structural annotation	PF13069	NA	NA
UHGV-1525565_84	PHROG	phrog_8905	NA	unknown function
UHGV-1525565_84	UniRef90	UniRef90_A0A3R6TRS3	Guanylate kinase-like domain-containing protein	NA
UHGV-1525565_87	PHROG	phrog_3922	major head protein	head and packaging
UHGV-1525565_87	UniRef90	UniRef90_R5DQY0	Phage capsid family	NA
UHGV-1525565_87	eggNOG-mapper	1121334.KB911067_gene269	NA	NA
UHGV-1525565_87	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1525565_87	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1525565_92	KOfam	K07097	NA	NA
UHGV-1525565_92	PHROG	phrog_16951	NA	unknown function
UHGV-1525565_92	UniRef90	UniRef90_A0A373KNQ8	Phosphohydrolase	NA
UHGV-1525565_92	eggNOG-mapper	397291.C804_00959	hydrolase activity, acting on ester bonds	NA
UHGV-1525565_92	COG	COG2404	Oligoribonuclease NrnA/c-di-AMP phosphodiesterase DhhP, DHH superfamily	NA
UHGV-1525565_96	Structural annotation	PF18129, MF_00613, NF002745	NA	NA
UHGV-1525565_97	UniRef90	UniRef90_A0A1Q6V1V0	NA	NA
UHGV-1525565_97	Pfam	PF20037	NA	DUF6440
UHGV-1525565_97	Structural annotation	PF20037	NA	NA
UHGV-1525565_99	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1525565_99	PHROG	phrog_2825	polymerase	DNA, RNA and nucleotide metabolism
UHGV-1525565_99	UniRef90	UniRef90_UPI00189897D8	reverse transcriptase family protein	NA
UHGV-1525565_99	eggNOG-mapper	243277.VC_2385	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1525565_99	PADLOC	retron_II-A1	NA	Retron
UHGV-1525565_99	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1525565_99	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1525565_100	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-1525565_100	UniRef90	UniRef90_A0A2A7AJA2	ThiF domain-containing protein	NA
UHGV-1525565_100	eggNOG-mapper	696369.KI912183_gene2290	TIGRFAM thiamine biosynthesis protein ThiF	NA
UHGV-1525565_100	PADLOC	E1E2_00031	E1-E2	CBASS
UHGV-1525565_100	Pfam	PF00899	ThiF family	ThiF
UHGV-1525565_100	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-1525565_100	Structural annotation	PF00899, MF_03049, NF004281, COG0476	NA	NA
UHGV-1525565_101	Structural annotation	PF03665, MF_03005, TIGR02256, COG5100	NA	NA
UHGV-1525565_106	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1525565_107	Structural annotation	PF18129, MF_00613, NF002745	NA	NA
UHGV-1525565_111	eggNOG-mapper	1125712.HMPREF1316_1548	NA	NA
UHGV-1525565_111	Structural annotation	PF18145, NF033611	NA	NA