UHGV-1526232

Genome information

Genome length 40,104 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-1526232
vOTU ID	vOTU-010215
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0320765
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.85
Jumbo phage	No

Genome content
Genome length	40,104 bps
GC content	38.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.37%
Average CDS length	661.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1526232_1	eggNOG-mapper	1114970.PSF113_4943	NA	NA
UHGV-1526232_3	Pfam	PF13011	leucine-zipper of insertion element IS481	LZ_Tnp_IS481
UHGV-1526232_3	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1526232_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1526232_5	PHROG	phrog_95	integrase	integration and excision
UHGV-1526232_5	UniRef90	UniRef90_A0A285BFP7	Site-specific DNA recombinase	NA
UHGV-1526232_5	eggNOG-mapper	1094508.Tsac_0903	Resolvase, N terminal domain	NA
UHGV-1526232_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1526232_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-1526232_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1526232_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1526232_5	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1526232_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1526232_15	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526232_15	UniRef90	UniRef90_UPI001E3A94F9	NA	NA
UHGV-1526232_15	eggNOG-mapper	1408324.JNJK01000006_gene1358	NA	NA
UHGV-1526232_15	Pfam	PF10926	NA	DUF2800
UHGV-1526232_15	COG	COG2887	RecB family exonuclease	NA
UHGV-1526232_16	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526232_16	UniRef90	UniRef90_UPI00054DF729	NA	NA
UHGV-1526232_16	eggNOG-mapper	1134413.ANNK01000054_gene2216	NA	NA
UHGV-1526232_16	Pfam	PF10926	NA	DUF2800
UHGV-1526232_16	COG	COG2887	RecB family exonuclease	NA
UHGV-1526232_17	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1526232_17	UniRef90	UniRef90_A0A2A7MCH8	NA	NA
UHGV-1526232_17	eggNOG-mapper	545697.HMPREF0216_00943	NA	NA
UHGV-1526232_17	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1526232_17	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1526232_18	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1526232_18	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1526232_18	UniRef90	UniRef90_A0A417KEE8	DNA-directed DNA polymerase	NA
UHGV-1526232_18	eggNOG-mapper	1209989.TepiRe1_2626	DNA polymerase A domain	NA
UHGV-1526232_18	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1526232_18	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1526232_18	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1526232_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526232_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1526232_22	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1526232_22	UniRef90	UniRef90_A0A1V1I1D5	Virulence-associated protein E	NA
UHGV-1526232_22	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-1526232_22	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1526232_22	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1526232_22	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1526232_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526232_24	UniRef90	UniRef90_A0A2X4N3Y7	VRR-NUC domain	NA
UHGV-1526232_24	eggNOG-mapper	1095750.HMPREF9970_1023	VRR-NUC domain protein	NA
UHGV-1526232_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1526232_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1526232_27	UniRef90	UniRef90_A0A8C5JGQ8	Helicase ATP-binding domain-containing protein	NA
UHGV-1526232_27	eggNOG-mapper	1230342.CTM_17237	snf2 family	NA
UHGV-1526232_27	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1526232_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1526232_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1526232_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1526232_27	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1526232_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1526232_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526232_28	UniRef90	UniRef90_UPI0018C50C6C	HNH endonuclease	NA
UHGV-1526232_28	eggNOG-mapper	411465.PEPMIC_00730	HNH nucleases	NA
UHGV-1526232_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1526232_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1526232_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1526232_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1526232_29	UniRef90	UniRef90_I7L6H2	Methyltransferase	NA
UHGV-1526232_29	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1526232_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1526232_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1526232_29	COG	COG0863	DNA modification methylase	NA
UHGV-1526232_29	Structural annotation	PF02195, PF10354, TIGR00180, NF010253, COG5119	NA	NA
UHGV-1526232_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1526232_30	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1526232_30	UniRef90	UniRef90_A0A7K4BKZ5	Type II methyltransferase	NA
UHGV-1526232_30	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-1526232_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1526232_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1526232_30	COG	COG0863	DNA modification methylase	NA
UHGV-1526232_30	Structural annotation	PF01555, NF008572, COG2263	NA	NA
UHGV-1526232_31	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-1526232_31	PHROG	phrog_1569	NA	unknown function
UHGV-1526232_31	UniRef90	UniRef90_A0A8C5JBU3	Methionine adenosyltransferase	NA
UHGV-1526232_31	eggNOG-mapper	441768.ACL_0600	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-1526232_31	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-1526232_31	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-1526232_31	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-1526232_31	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-1526232_31	Structural annotation	PF02773, PF02772, PF00438, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-1526232_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1526232_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1526232_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1526232_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1526232_33	UniRef90	UniRef90_A0A151ATM3	Phage terminase	NA
UHGV-1526232_33	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-1526232_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1526232_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1526232_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1526232_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1526232_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-1526232_34	UniRef90	UniRef90_A0A8B5JWT1	Phage portal protein	NA
UHGV-1526232_34	eggNOG-mapper	1229783.C273_11311	Phage portal protein	NA
UHGV-1526232_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1526232_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1526232_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1526232_35	KOfam	K06904	NA	NA
UHGV-1526232_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1526232_35	UniRef90	UniRef90_UPI001C8D27A1	HK97 family phage prohead protease	NA
UHGV-1526232_35	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-1526232_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1526232_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1526232_35	COG	COG3740	Phage head maturation protease	NA
UHGV-1526232_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1526232_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-1526232_36	UniRef90	UniRef90_A0A6N9P6E5	Phage major capsid protein	NA
UHGV-1526232_36	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1526232_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1526232_36	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1526232_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1526232_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1526232_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1526232_44	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-1526232_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1526232_44	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1526232_45	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-1526232_46	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-1526232_52	PHROG	phrog_5181	NA	unknown function
UHGV-1526232_52	eggNOG-mapper	998088.B565_2478	tail collar domain protein	NA
UHGV-1526232_52	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA