UHGV-1526761

Genome information

Genome length 25,012 bps

CDS count 33

Completeness 75.43% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1526761
vOTU ID	vOTU-017442
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0201526
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.91
Jumbo phage	No

Genome content
Genome length	25,012 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.66%
Average CDS length	712.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1526761_1	PHROG	phrog_1529	NA	unknown function
UHGV-1526761_1	UniRef90	UniRef90_A0A062WUP7	DNA-binding protein	NA
UHGV-1526761_1	eggNOG-mapper	1035189.HMPREF9954_1916	NA	NA
UHGV-1526761_1	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1526761_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1526761_2	PHROG	phrog_1110	endolysin	lysis
UHGV-1526761_2	UniRef90	UniRef90_X8KD37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1526761_2	eggNOG-mapper	888049.HMPREF8578_0249	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1526761_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1526761_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1526761_2	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1526761_2	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-1526761_3	PHROG	phrog_32123	NA	unknown function
UHGV-1526761_3	UniRef90	UniRef90_UPI001BD93596	collagen-like protein	NA
UHGV-1526761_3	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-1526761_3	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1526761_3	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1526761_4	PHROG	phrog_608	holin	lysis
UHGV-1526761_4	UniRef90	UniRef90_UPI00115BDBC0	phage holin	NA
UHGV-1526761_4	eggNOG-mapper	936580.HMPREF1516_0703	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1526761_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1526761_4	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1526761_5	PHROG	phrog_4257	NA	unknown function
UHGV-1526761_5	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-1526761_5	eggNOG-mapper	1005705.HMPREF9967_1056	NA	NA
UHGV-1526761_6	PHROG	phrog_1554	NA	unknown function
UHGV-1526761_6	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-1526761_6	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-1526761_6	Structural annotation	PF07104	NA	NA
UHGV-1526761_7	PHROG	phrog_12683	NA	unknown function
UHGV-1526761_7	UniRef90	UniRef90_A0A081R6K4	ATP synthase F0 sector subunit C	NA
UHGV-1526761_7	eggNOG-mapper	1095737.HMPREF1110_1748	NA	NA
UHGV-1526761_8	PHROG	phrog_1330	tail protein	tail
UHGV-1526761_8	UniRef90	UniRef90_F9PY45	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1526761_8	eggNOG-mapper	1035189.HMPREF9954_1922	Chaperone of endosialidase	NA
UHGV-1526761_8	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1526761_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1526761_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1526761_8	COG	COG4926	Phage-related protein	NA
UHGV-1526761_8	Structural annotation	PF14594, PF00629, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-1526761_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1526761_9	UniRef90	UniRef90_A0A1F0TGE5	Phage tail protein	NA
UHGV-1526761_9	eggNOG-mapper	1297534.CAUJ01000005_gene171	NA	NA
UHGV-1526761_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1526761_10	PHROG	phrog_15002	NA	unknown function
UHGV-1526761_10	UniRef90	UniRef90_B1I7B2	Prophage LambdaSa04, tail tape measure protein, family	NA
UHGV-1526761_10	eggNOG-mapper	1566990.A0A0A0YSE6_9CAUD	peptidoglycan catabolic process	NA
UHGV-1526761_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1526761_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1526761_10	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1526761_11	PHROG	phrog_3343	NA	unknown function
UHGV-1526761_12	PHROG	phrog_2634	major tail protein	tail
UHGV-1526761_12	UniRef90	UniRef90_A0A0A0YQP9	Major tail protein	NA
UHGV-1526761_12	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1526761_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1526761_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1526761_13	UniRef90	UniRef90_A0A0T8CJ85	Bacteriophage pi2 protein 37	NA
UHGV-1526761_13	eggNOG-mapper	272623.L58927	NA	NA
UHGV-1526761_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1526761_14	PHROG	phrog_3334	NA	unknown function
UHGV-1526761_15	PHROG	phrog_3332	head-tail adaptor	connector
UHGV-1526761_15	UniRef90	UniRef90_A0A0A0YRS5	Head-tail adapter protein	NA
UHGV-1526761_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1526761_16	PHROG	phrog_3305	virion structural protein	head and packaging
UHGV-1526761_16	UniRef90	UniRef90_A0A3B8DLV7	Glycerate kinase	NA
UHGV-1526761_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1526761_17	UniRef90	UniRef90_A0A0A0YQP6	Capsid protein	NA
UHGV-1526761_17	eggNOG-mapper	1566990.A0A0A0YQP6_9CAUD	peptidase activity	NA
UHGV-1526761_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1526761_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1526761_18	KOfam	K06904	NA	NA
UHGV-1526761_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1526761_18	UniRef90	UniRef90_A0A0A0YV29	Prohead maturation protease	NA
UHGV-1526761_18	eggNOG-mapper	1566990.A0A0A0YV29_9CAUD	peptidase activity	NA
UHGV-1526761_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1526761_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1526761_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1526761_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1526761_19	UniRef90	UniRef90_A0A0A0YSD7	Portal protein	NA
UHGV-1526761_19	eggNOG-mapper	1566990.A0A0A0YSD7_9CAUD	Phage portal protein	NA
UHGV-1526761_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1526761_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1526761_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1526761_20	UniRef90	UniRef90_A0A7T2ZXC7	Terminase large subunit	NA
UHGV-1526761_20	eggNOG-mapper	1566990.A0A0A0YRS2_9CAUD	Phage Terminase	NA
UHGV-1526761_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1526761_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1526761_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1526761_21	PHROG	phrog_3567	NA	unknown function
UHGV-1526761_21	UniRef90	UniRef90_A0A7X1BZ96	MerR family transcriptional regulator	NA
UHGV-1526761_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1526761_22	UniRef90	UniRef90_B1I799	HNH endonuclease domain protein	NA
UHGV-1526761_22	eggNOG-mapper	1566990.A0A0A0YV65_9CAUD	HNH endonuclease	NA
UHGV-1526761_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1526761_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1526761_23	PHROG	phrog_216	integrase	integration and excision
UHGV-1526761_23	UniRef90	UniRef90_A0A0A0YRV7	Site-specific recombinase	NA
UHGV-1526761_23	eggNOG-mapper	1297534.CAUJ01000005_gene184	Integrase	NA
UHGV-1526761_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1526761_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1526761_23	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1526761_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1526761_24	UniRef90	UniRef90_A0A116QW24	Bacteriophage transcriptional activator	NA
UHGV-1526761_24	eggNOG-mapper	1123315.AUIP01000003_gene229	Transcriptional regulator, RinA family	NA
UHGV-1526761_24	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1526761_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1526761_25	PHROG	phrog_17529	NA	unknown function
UHGV-1526761_25	UniRef90	UniRef90_Q7Y4J4	Gp30	NA
UHGV-1526761_25	eggNOG-mapper	585203.SMSK564_1294	SPFH domain / Band 7 family	NA
UHGV-1526761_25	AcrCatalog	cluster_31176	NA	NA
UHGV-1526761_25	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1526761_26	PHROG	phrog_5415	NA	unknown function
UHGV-1526761_27	PHROG	phrog_98	NA	unknown function
UHGV-1526761_27	UniRef90	UniRef90_A0A098AP53	Putative prophage protein	NA
UHGV-1526761_27	eggNOG-mapper	1000588.HMPREF9965_1710	YopX protein	NA
UHGV-1526761_27	Pfam	PF09643	YopX protein	YopX
UHGV-1526761_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1526761_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1526761_28	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1526761_28	UniRef90	UniRef90_A0A371QG35	DNA-binding protein	NA
UHGV-1526761_28	eggNOG-mapper	1035189.HMPREF9954_1947	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1526761_28	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1526761_28	Structural annotation	PF08761, MF_01020, NF007113, COG4508	NA	NA
UHGV-1526761_29	PHROG	phrog_884	NA	unknown function
UHGV-1526761_29	UniRef90	UniRef90_UPI00094EDA92	NA	NA
UHGV-1526761_29	eggNOG-mapper	768726.HMPREF9178_1075	NA	NA
UHGV-1526761_29	Pfam	PF07116	NA	DUF1372
UHGV-1526761_29	Structural annotation	PF07116, COG3585	NA	NA
UHGV-1526761_31	PHROG	phrog_3606	NA	unknown function
UHGV-1526761_32	PHROG	phrog_121	NA	unknown function
UHGV-1526761_32	UniRef90	UniRef90_A0A139R8C2	NA	NA
UHGV-1526761_32	eggNOG-mapper	1123309.AQYB01000007_gene1895	NA	NA
UHGV-1526761_32	Pfam	PF07852	NA	DUF1642
UHGV-1526761_32	Structural annotation	PF07852	NA	NA
UHGV-1526761_33	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-1526761_33	UniRef90	UniRef90_A0A4D6BIZ7	Putative C5 methylase	NA
UHGV-1526761_33	eggNOG-mapper	1297534.CAUJ01000005_gene198	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1526761_33	COG	COG0270	DNA-cytosine methylase	NA