UHGV-1528433

Genome information

Genome length 21,610 bps

CDS count 31

Completeness 58.24% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1528433
vOTU ID	vOTU-036422
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0193823
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.07
Jumbo phage	No

Genome content
Genome length	21,610 bps
GC content	36.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	90.13%
Average CDS length	630.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1528433_1	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-1528433_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1528433_2	PHROG	phrog_670	endolysin	lysis
UHGV-1528433_2	UniRef90	UniRef90_UPI0018A89563	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1528433_2	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-1528433_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1528433_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1528433_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1528433_2	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-1528433_4	PHROG	phrog_1129	holin	lysis
UHGV-1528433_4	UniRef90	UniRef90_A0A3E3DX81	Holin	NA
UHGV-1528433_4	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1528433_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1528433_4	Structural annotation	PF06946	NA	NA
UHGV-1528433_5	PHROG	phrog_1382	NA	unknown function
UHGV-1528433_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1528433_5	Structural annotation	NF040910	NA	NA
UHGV-1528433_7	Structural annotation	PF08244	NA	NA
UHGV-1528433_10	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1528433_10	Structural annotation	PF10651	NA	NA
UHGV-1528433_11	PHROG	phrog_9994	NA	unknown function
UHGV-1528433_11	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-1528433_11	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-1528433_11	Structural annotation	PF08931, PF20747	NA	NA
UHGV-1528433_12	PHROG	phrog_538	minor tail protein	tail
UHGV-1528433_12	UniRef90	UniRef90_A0A1M6B1Q8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1528433_12	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-1528433_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1528433_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1528433_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1528433_13	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-1528433_13	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1528433_14	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1528433_14	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1528433_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1528433_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1528433_15	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-1528433_15	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-1528433_15	COG	COG5412	Phage-related protein	NA
UHGV-1528433_15	Structural annotation	PF20155	NA	NA
UHGV-1528433_16	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-1528433_16	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-1528433_17	PHROG	phrog_1021	NA	unknown function
UHGV-1528433_17	eggNOG-mapper	86416.Clopa_2788	NA	NA
UHGV-1528433_18	PHROG	phrog_885	major tail protein	tail
UHGV-1528433_18	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-1528433_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1528433_19	PHROG	phrog_957	head protein	head and packaging
UHGV-1528433_19	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-1528433_19	Structural annotation	PF12691	NA	NA
UHGV-1528433_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1528433_20	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-1528433_20	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-1528433_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1528433_20	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-1528433_21	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-1528433_21	UniRef90	UniRef90_E2NRA2	Putative phage head-tail adaptor	NA
UHGV-1528433_21	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-1528433_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1528433_22	PHROG	phrog_1236	head protein	head and packaging
UHGV-1528433_22	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-1528433_22	Structural annotation	PF05135	NA	NA
UHGV-1528433_23	PHROG	phrog_15682	NA	unknown function
UHGV-1528433_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-1528433_24	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-1528433_24	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-1528433_24	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1528433_24	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1528433_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1528433_25	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-1528433_25	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-1528433_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1528433_25	Structural annotation	PF06810	NA	NA
UHGV-1528433_27	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1528433_27	UniRef90	UniRef90_E2NR95	Phage protein F-like protein	NA
UHGV-1528433_27	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-1528433_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1528433_27	COG	COG2369	NA	NA
UHGV-1528433_27	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1528433_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-1528433_28	UniRef90	UniRef90_E2NR94	Putative phage portal protein, SPP1 family	NA
UHGV-1528433_28	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1528433_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1528433_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1528433_29	PHROG	phrog_1233	NA	unknown function
UHGV-1528433_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1528433_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1528433_30	UniRef90	UniRef90_E2NR92	Phage terminase, large subunit, PBSX family	NA
UHGV-1528433_30	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-1528433_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1528433_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1528433_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1528433_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1528433_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1528433_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1528433_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1528433_31	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-1528433_31	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-1528433_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1528433_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1528433_31	Structural annotation	PF03592, COG3728	NA	NA