UHGV-1528451

Genome information

Genome length 27,574 bps

CDS count 37

Completeness 66.59% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1528451
vOTU ID	vOTU-036424
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0201789
BioSample	SAMEA3541494
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.4
Jumbo phage	No

Genome content
Genome length	27,574 bps
GC content	37.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	86.63%
Average CDS length	649.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1528451_1	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1528451_1	eggNOG-mapper	1123302.KB904182_gene67	NA	NA
UHGV-1528451_1	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1528451_2	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1528451_2	UniRef90	UniRef90_A0A1I7JLB0	Phage gp6-like head-tail connector protein	NA
UHGV-1528451_2	eggNOG-mapper	1123302.KB904182_gene68	Phage gp6-like head-tail connector protein	NA
UHGV-1528451_2	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1528451_2	Structural annotation	PF05135	NA	NA
UHGV-1528451_3	PHROG	phrog_5279	NA	unknown function
UHGV-1528451_3	UniRef90	UniRef90_A0A447UCR4	NA	NA
UHGV-1528451_4	PHROG	phrog_29	major head protein	head and packaging
UHGV-1528451_4	UniRef90	UniRef90_A0A4D6A5D1	Major capsid protein	NA
UHGV-1528451_4	eggNOG-mapper	1123315.AUIP01000003_gene244	Phage major capsid protein E	NA
UHGV-1528451_4	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1528451_4	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1528451_5	PHROG	phrog_909	major head protein	head and packaging
UHGV-1528451_5	UniRef90	UniRef90_A0A4D6ANB6	Major capsid protein	NA
UHGV-1528451_5	eggNOG-mapper	1123302.KB904182_gene70	NA	NA
UHGV-1528451_5	Structural annotation	PF02924	NA	NA
UHGV-1528451_6	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1528451_6	UniRef90	UniRef90_A0A3L9DSR8	NA	NA
UHGV-1528451_6	eggNOG-mapper	1123315.AUIP01000003_gene242	NA	NA
UHGV-1528451_6	Pfam	PF14265	NA	DUF4355
UHGV-1528451_6	Structural annotation	PF14265	NA	NA
UHGV-1528451_7	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1528451_7	UniRef90	UniRef90_A0A4D6A5U5	Phage_Mu_F domain-containing protein	NA
UHGV-1528451_7	eggNOG-mapper	1123302.KB904182_gene74	Phage Mu protein F like protein	NA
UHGV-1528451_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1528451_7	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1528451_7	COG	COG2369	NA	NA
UHGV-1528451_7	Structural annotation	PF04233, PF18812, TIGR01641, COG2369	NA	NA
UHGV-1528451_8	PHROG	phrog_64	portal protein	head and packaging
UHGV-1528451_8	UniRef90	UniRef90_A0A1I7JLS6	Phage portal protein, SPP1 family	NA
UHGV-1528451_8	eggNOG-mapper	1123302.KB904182_gene75	Phage portal protein, SPP1 family	NA
UHGV-1528451_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1528451_8	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1528451_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1528451_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1528451_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1528451_9	UniRef90	UniRef90_A0A1I7JLS5	Phage terminase, large subunit, PBSX family	NA
UHGV-1528451_9	eggNOG-mapper	1123315.AUIP01000003_gene234	Phage terminase, large subunit, PBSX family	NA
UHGV-1528451_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1528451_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-1528451_9	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1528451_10	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1528451_10	UniRef90	UniRef90_A0A3E2SH31	Helix-turn-helix domain-containing protein	NA
UHGV-1528451_10	eggNOG-mapper	413066.A1EAE0_9CAUD	endonuclease activity	NA
UHGV-1528451_10	Structural annotation	PF07141	NA	NA
UHGV-1528451_11	UniRef90	UniRef90_A0A3E2SGY8	GIY-YIG nuclease family protein	NA
UHGV-1528451_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1528451_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1528451_12	UniRef90	UniRef90_A0A1H7XRF7	Phage transcriptional activator, RinA family	NA
UHGV-1528451_12	eggNOG-mapper	1069533.Sinf_0781	Transcriptional regulator, RinA family	NA
UHGV-1528451_12	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1528451_12	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1528451_13	PHROG	phrog_3745	NA	unknown function
UHGV-1528451_13	UniRef90	UniRef90_A0A447UCM2	Phage associated protein	NA
UHGV-1528451_14	Structural annotation	PF20432, MF_00535, NF040507, COG1476	NA	NA
UHGV-1528451_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1528451_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1528451_15	UniRef90	UniRef90_A0A3E2SGY5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1528451_15	eggNOG-mapper	1123302.KB904182_gene84	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1528451_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1528451_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1528451_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1528451_16	PHROG	phrog_121	NA	unknown function
UHGV-1528451_16	UniRef90	UniRef90_UPI000735A58E	NA	NA
UHGV-1528451_16	eggNOG-mapper	1123315.AUIP01000003_gene225	NA	NA
UHGV-1528451_16	Pfam	PF07852	NA	DUF1642
UHGV-1528451_16	Structural annotation	PF07852	NA	NA
UHGV-1528451_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1528451_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1528451_17	UniRef90	UniRef90_A0A3E2SGZ1	DNA primase	NA
UHGV-1528451_17	eggNOG-mapper	1123302.KB904182_gene86	Primase C terminal 2 (PriCT-2)	NA
UHGV-1528451_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1528451_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-1528451_17	COG	COG3598	RecA-family ATPase	NA
UHGV-1528451_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1528451_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1528451_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1528451_18	UniRef90	UniRef90_A0A1S5WA97	Putatitive DEAD/DEAH box helicase	NA
UHGV-1528451_18	eggNOG-mapper	1123304.AQYA01000037_gene198	helicase	NA
UHGV-1528451_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1528451_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1528451_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1528451_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1528451_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1528451_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1528451_19	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-1528451_19	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-1528451_19	Structural annotation	PF17375	NA	NA
UHGV-1528451_20	PHROG	phrog_2698	NA	unknown function
UHGV-1528451_20	UniRef90	UniRef90_A0A3S4JK96	NA	NA
UHGV-1528451_20	eggNOG-mapper	1123302.KB904182_gene88	NA	NA
UHGV-1528451_20	Structural annotation	PF17426, NF005674	NA	NA
UHGV-1528451_21	PHROG	phrog_1029	NA	unknown function
UHGV-1528451_21	UniRef90	UniRef90_A0A4U9XM62	NA	NA
UHGV-1528451_21	eggNOG-mapper	1123302.KB904182_gene89	NA	NA
UHGV-1528451_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1528451_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1528451_22	UniRef90	UniRef90_A0A116LMM6	NA	NA
UHGV-1528451_22	eggNOG-mapper	1214217.ALNF01000014_gene1400	NA	NA
UHGV-1528451_23	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1528451_23	UniRef90	UniRef90_A0A3S4I583	NA	NA
UHGV-1528451_23	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-1528451_23	Pfam	PF13479	AAA domain	AAA_24
UHGV-1528451_23	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1528451_24	PHROG	phrog_2486	NA	unknown function
UHGV-1528451_24	UniRef90	UniRef90_A0A116NZT0	NA	NA
UHGV-1528451_25	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1528451_25	PHROG	phrog_1499	NA	unknown function
UHGV-1528451_25	UniRef90	UniRef90_A0A1S5WAV4	AAA_23 domain-containing protein	NA
UHGV-1528451_25	eggNOG-mapper	1123315.AUIP01000003_gene213	AAA domain	NA
UHGV-1528451_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-1528451_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1528451_25	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1528451_26	PHROG	phrog_5118	NA	unknown function
UHGV-1528451_27	PHROG	phrog_5666	NA	unknown function
UHGV-1528451_27	UniRef90	UniRef90_A0A2I1YI46	XRE family transcriptional regulator	NA
UHGV-1528451_27	eggNOG-mapper	764299.STRIC_0083	Transcriptional	NA
UHGV-1528451_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1528451_28	PHROG	phrog_1022	NA	unknown function
UHGV-1528451_29	PHROG	phrog_904	excisionase	integration and excision
UHGV-1528451_29	UniRef90	UniRef90_A0A368UDS7	Excisionase	NA
UHGV-1528451_29	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-1528451_29	Structural annotation	PF20063	NA	NA
UHGV-1528451_30	PHROG	phrog_6996	NA	unknown function
UHGV-1528451_31	PHROG	phrog_6178	NA	unknown function
UHGV-1528451_32	UniRef90	UniRef90_A0A3E2SH08	XRE family transcriptional regulator	NA
UHGV-1528451_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1528451_32	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1528451_33	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1528451_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1528451_33	UniRef90	UniRef90_A0A6F9N1R5	Helix-turn-helix domain-containing protein	NA
UHGV-1528451_33	eggNOG-mapper	157924.Q7Y4M0_9CAUD	sequence-specific DNA binding	NA
UHGV-1528451_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1528451_33	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1528451_34	PHROG	phrog_10226	NA	unknown function
UHGV-1528451_34	eggNOG-mapper	365659.smi_1368	NA	NA
UHGV-1528451_34	Structural annotation	PF01878, COG4127	NA	NA
UHGV-1528451_35	PHROG	phrog_87	metallo-protease	other
UHGV-1528451_35	UniRef90	UniRef90_A0A1C3SRC4	Peptidase_M78 domain-containing protein	NA
UHGV-1528451_35	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-1528451_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1528451_35	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1528451_36	PHROG	phrog_7237	NA	unknown function
UHGV-1528451_36	eggNOG-mapper	706437.HMPREF0813_00094	NA	NA
UHGV-1528451_36	Structural annotation	MF_00867	NA	NA
UHGV-1528451_37	KOfam	K14059	int; integrase	NA
UHGV-1528451_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1528451_37	UniRef90	UniRef90_A0A3E2SH17	Site-specific integrase	NA
UHGV-1528451_37	eggNOG-mapper	1069533.Sinf_0759	DNA integration	NA
UHGV-1528451_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1528451_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1528451_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1528451_37	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA