UHGV-1528937

Genome information

Genome length 31,770 bps

CDS count 58

Completeness 96.67% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1528937
vOTU ID	vOTU-013021
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0223854
BioSample	SAMEA3665245
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.12
Jumbo phage	No

Genome content
Genome length	31,770 bps
GC content	49.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.18%
Average CDS length	519.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1528937_1	PHROG	phrog_2550	NA	unknown function
UHGV-1528937_1	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-1528937_1	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1528937_1	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1528937_2	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1528937_2	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-1528937_2	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-1528937_2	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1528937_2	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1528937_3	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-1528937_3	eggNOG-mapper	665956.HMPREF1032_02261	NA	NA
UHGV-1528937_3	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1528937_3	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1528937_4	PHROG	phrog_78	tail terminator	connector
UHGV-1528937_4	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-1528937_4	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-1528937_4	Structural annotation	PF20765	NA	NA
UHGV-1528937_5	PHROG	phrog_88	major tail protein	tail
UHGV-1528937_5	UniRef90	UniRef90_A0A2V2GLL2	Phage tail protein	NA
UHGV-1528937_5	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-1528937_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1528937_5	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1528937_6	PHROG	phrog_709	NA	unknown function
UHGV-1528937_6	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-1528937_6	Structural annotation	PF19591	NA	NA
UHGV-1528937_7	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1528937_7	UniRef90	UniRef90_A0A2V2GLB5	Phage tail tape measure protein	NA
UHGV-1528937_7	eggNOG-mapper	1033743.CAES01000020_gene3130	Phage-related minor tail protein	NA
UHGV-1528937_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1528937_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1528937_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1528937_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1528937_8	PHROG	phrog_20385	minor tail protein	tail
UHGV-1528937_8	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-1528937_8	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-1528937_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1528937_9	PHROG	phrog_7064	tail protein	tail
UHGV-1528937_9	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-1528937_9	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1528937_10	PHROG	phrog_5811	NA	unknown function
UHGV-1528937_10	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-1528937_10	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-1528937_11	KOfam	K10461	KLHL24_35; kelch-like protein 24/35	NA
UHGV-1528937_11	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-1528937_11	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-1528937_12	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-1528937_12	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-1528937_14	PHROG	phrog_27545	NA	unknown function
UHGV-1528937_14	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-1528937_14	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1528937_14	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1528937_15	PHROG	phrog_37604	NA	unknown function
UHGV-1528937_15	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-1528937_16	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-1528937_17	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1528937_17	PHROG	phrog_435	endolysin	lysis
UHGV-1528937_17	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-1528937_17	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1528937_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1528937_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1528937_17	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1528937_18	KOfam	K14059	int; integrase	NA
UHGV-1528937_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1528937_18	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-1528937_18	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1528937_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1528937_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1528937_18	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1528937_20	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-1528937_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1528937_20	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1528937_20	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1528937_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1528937_21	UniRef90	UniRef90_A0A417HNT1	XRE family transcriptional regulator	NA
UHGV-1528937_21	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1528937_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1528937_21	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1528937_22	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-1528937_22	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1528937_25	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-1528937_25	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1528937_26	Structural annotation	NF041588	NA	NA
UHGV-1528937_30	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1528937_30	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-1528937_30	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1528937_30	Pfam	PF06378	NA	DUF1071
UHGV-1528937_30	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1528937_31	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1528937_31	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1528937_31	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1528937_31	Structural annotation	PF05772	NA	NA
UHGV-1528937_32	PHROG	phrog_7566	NA	unknown function
UHGV-1528937_32	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1528937_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1528937_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1528937_33	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-1528937_33	eggNOG-mapper	445971.ANASTE_01949	Single-stranded DNA-binding protein	NA
UHGV-1528937_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1528937_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1528937_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1528937_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1528937_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1528937_35	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1528937_35	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-1528937_35	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1528937_35	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-1528937_36	PHROG	phrog_9804	NA	unknown function
UHGV-1528937_36	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-1528937_36	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1528937_36	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1528937_36	Structural annotation	PF11417	NA	NA
UHGV-1528937_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1528937_37	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1528937_37	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1528937_37	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1528937_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1528937_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1528937_39	Structural annotation	TIGR04381	NA	NA
UHGV-1528937_45	PHROG	phrog_38832	NA	unknown function
UHGV-1528937_45	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1528937_45	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1528937_46	Structural annotation	PF04570	NA	NA
UHGV-1528937_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1528937_50	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-1528937_50	Pfam	PF07374	NA	DUF1492
UHGV-1528937_50	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1528937_52	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1528937_52	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-1528937_52	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-1528937_52	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1528937_52	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-1528937_52	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1528937_53	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1528937_53	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-1528937_53	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-1528937_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1528937_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1528937_54	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1528937_54	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1528937_54	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-1528937_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1528937_54	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1528937_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1528937_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1528937_55	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-1528937_55	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1528937_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1528937_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1528937_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1528937_55	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1528937_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-1528937_56	UniRef90	UniRef90_A0A2V2GQD5	Phage portal protein	NA
UHGV-1528937_56	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1528937_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1528937_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1528937_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1528937_56	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1528937_57	KOfam	K06904	NA	NA
UHGV-1528937_57	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1528937_57	UniRef90	UniRef90_A0A2V2GNJ3	HK97 family phage prohead protease	NA
UHGV-1528937_57	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-1528937_57	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1528937_57	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1528937_57	COG	COG3740	Phage head maturation protease	NA
UHGV-1528937_57	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1528937_58	PHROG	phrog_10	major head protein	head and packaging
UHGV-1528937_58	UniRef90	UniRef90_A0A2V2GRA2	Phage major capsid protein	NA
UHGV-1528937_58	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1528937_58	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1528937_58	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1528937_58	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1528937_58	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA