UHGV-1529184

Genome information

Genome length 25,652 bps

CDS count 40

Completeness 55.57% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-1529184
vOTU ID	vOTU-022817
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0205475
BioSample	SAMEA2737802
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.44
Jumbo phage	No

Genome content
Genome length	25,652 bps
GC content	41.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.13%
Average CDS length	583.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1529184_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1529184_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1529184_1	UniRef90	UniRef90_UPI0011DE2A43	recombinase family protein	NA
UHGV-1529184_1	eggNOG-mapper	742723.HMPREF9477_00942	Resolvase, N terminal domain	NA
UHGV-1529184_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1529184_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1529184_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1529184_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1529184_2	PHROG	phrog_5059	NA	unknown function
UHGV-1529184_2	UniRef90	UniRef90_A0A7X5EGP0	NA	NA
UHGV-1529184_2	eggNOG-mapper	632292.Calhy_0845	NA	NA
UHGV-1529184_2	Pfam	PF08861	NA	DUF1828
UHGV-1529184_2	Pfam	PF08862	NA	DUF1829
UHGV-1529184_2	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-1529184_3	eggNOG-mapper	632292.Calhy_0844	NA	NA
UHGV-1529184_4	COG	COG2314	NA	NA
UHGV-1529184_5	PHROG	phrog_20886	NA	unknown function
UHGV-1529184_5	eggNOG-mapper	1321782.HMPREF1986_02242	NA	NA
UHGV-1529184_5	Structural annotation	PF06114	NA	NA
UHGV-1529184_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1529184_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1529184_6	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-1529184_6	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1529184_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1529184_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1529184_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1529184_7	UniRef90	UniRef90_R7N1J3	Helix-turn-helix domain protein	NA
UHGV-1529184_7	eggNOG-mapper	420890.LCGL_1425	Helix-turn-helix XRE-family like proteins	NA
UHGV-1529184_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1529184_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1529184_12	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-1529184_14	PHROG	phrog_1499	NA	unknown function
UHGV-1529184_14	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-1529184_14	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-1529184_14	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1529184_14	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1529184_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1529184_15	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-1529184_15	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-1529184_15	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-1529184_16	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1529184_16	UniRef90	UniRef90_A0A316M6N2	NA	NA
UHGV-1529184_16	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-1529184_16	Pfam	PF12684	NA	DUF3799
UHGV-1529184_16	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1529184_16	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1529184_17	PHROG	phrog_7566	NA	unknown function
UHGV-1529184_17	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-1529184_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1529184_18	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-1529184_18	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1529184_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1529184_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1529184_20	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1529184_20	UniRef90	UniRef90_A0A316M6Z3	NA	NA
UHGV-1529184_20	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-1529184_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1529184_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1529184_20	Structural annotation	PF14297	NA	NA
UHGV-1529184_21	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1529184_21	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1529184_21	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1529184_21	Structural annotation	PF13613, NF040595, COG2771	NA	NA
UHGV-1529184_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1529184_22	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-1529184_22	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1529184_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1529184_22	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1529184_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1529184_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1529184_23	UniRef90	UniRef90_A0A316MA86	DNA methylase N-4	NA
UHGV-1529184_23	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1529184_23	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-1529184_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1529184_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1529184_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1529184_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1529184_26	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1529184_26	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-1529184_26	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-1529184_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1529184_27	PHROG	phrog_874	NA	unknown function
UHGV-1529184_27	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-1529184_27	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1529184_27	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1529184_28	Structural annotation	PF13443, NF040507, COG1476	NA	NA
UHGV-1529184_29	UniRef90	UniRef90_A0A412FGX2	OrfB_Zn_ribbon domain-containing protein	NA
UHGV-1529184_32	PHROG	phrog_5051	NA	unknown function
UHGV-1529184_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1529184_34	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-1529184_34	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1529184_34	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1529184_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1529184_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1529184_36	UniRef90	UniRef90_A0A6L6XD66	Phage portal protein	NA
UHGV-1529184_36	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-1529184_36	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1529184_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1529184_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1529184_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1529184_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1529184_37	PHROG	phrog_10250	NA	unknown function
UHGV-1529184_37	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-1529184_37	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1529184_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1529184_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1529184_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1529184_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1529184_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1529184_38	PHROG	phrog_1233	NA	unknown function
UHGV-1529184_38	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1529184_38	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-1529184_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-1529184_39	UniRef90	UniRef90_A0A173S8B4	Phage portal protein, SPP1 family	NA
UHGV-1529184_39	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1529184_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1529184_39	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1529184_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1529184_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1529184_40	UniRef90	UniRef90_A0A173S657	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-1529184_40	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1529184_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1529184_40	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1529184_40	COG	COG2369	NA	NA
UHGV-1529184_40	Structural annotation	TIGR01641	NA	NA