UHGV-1529186

Genome information

Genome length 35,012 bps

CDS count 50

Completeness 89.34% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-1529186
vOTU ID	vOTU-018856
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0254906
BioSample	SAMN00041546
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.11
Jumbo phage	No

Genome content
Genome length	35,012 bps
GC content	49.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.12%
Average CDS length	650.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1529186_2	UniRef90	UniRef90_A0A316M336	MuF_C domain-containing protein	NA
UHGV-1529186_2	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1529186_2	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1529186_2	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1529186_4	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1529186_4	UniRef90	UniRef90_A0A847CX66	NA	NA
UHGV-1529186_4	eggNOG-mapper	871968.DESME_08885	NA	NA
UHGV-1529186_4	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1529186_5	Structural annotation	PF11650	NA	NA
UHGV-1529186_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-1529186_6	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-1529186_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1529186_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-1529186_7	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-1529186_7	eggNOG-mapper	1121335.Clst_0392	NA	NA
UHGV-1529186_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1529186_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1529186_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1529186_10	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-1529186_10	eggNOG-mapper	1314.HKU360_01493	Phage terminase, large subunit	NA
UHGV-1529186_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1529186_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1529186_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1529186_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-1529186_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1529186_11	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-1529186_11	UniRef90	UniRef90_A0A1C6G1E6	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-1529186_11	eggNOG-mapper	1123288.SOV_2c10540	Helix-turn-helix of insertion element transposase	NA
UHGV-1529186_11	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1529186_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1529186_12	eggNOG-mapper	445972.ANACOL_00233	NA	NA
UHGV-1529186_12	Structural annotation	PF07374, TIGR01636, COG1342	NA	NA
UHGV-1529186_14	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-1529186_14	eggNOG-mapper	411902.CLOBOL_05680	UMP catabolic process	NA
UHGV-1529186_14	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-1529186_14	Structural annotation	PF08645, TIGR01689, COG0241	NA	NA
UHGV-1529186_16	UniRef90	UniRef90_A0A810Q569	NA	NA
UHGV-1529186_16	Pfam	PF04448	NA	DUF551
UHGV-1529186_16	Structural annotation	NF041588	NA	NA
UHGV-1529186_19	eggNOG-mapper	1211814.CAPG01000088_gene4027	NA	NA
UHGV-1529186_20	PHROG	phrog_9662	NA	unknown function
UHGV-1529186_20	eggNOG-mapper	397290.C810_05182	NA	NA
UHGV-1529186_22	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-1529186_23	PHROG	phrog_25732	NA	unknown function
UHGV-1529186_23	UniRef90	UniRef90_UPI00058CBB51	Lar family restriction alleviation protein	NA
UHGV-1529186_23	Structural annotation	NF011227	NA	NA
UHGV-1529186_24	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1529186_24	UniRef90	UniRef90_A0A7I8D3P4	NA	NA
UHGV-1529186_24	eggNOG-mapper	1094556.MCY_01183	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1529186_24	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1529186_24	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1529186_24	Structural annotation	PF18909	NA	NA
UHGV-1529186_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1529186_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1529186_25	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1529186_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1529186_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1529186_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1529186_26	PHROG	phrog_28936	NA	unknown function
UHGV-1529186_26	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1529186_26	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1529186_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1529186_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1529186_27	UniRef90	UniRef90_A0A357WVP9	Single-stranded DNA-binding protein	NA
UHGV-1529186_27	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-1529186_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1529186_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1529186_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1529186_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1529186_27	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1529186_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1529186_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1529186_28	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-1529186_28	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1529186_28	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1529186_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1529186_28	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1529186_29	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1529186_29	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-1529186_29	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-1529186_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1529186_29	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-1529186_30	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1529186_31	PHROG	phrog_1389	NA	unknown function
UHGV-1529186_31	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-1529186_31	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1529186_32	PHROG	phrog_7566	NA	unknown function
UHGV-1529186_32	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-1529186_33	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1529186_33	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-1529186_33	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1529186_33	Pfam	PF06378	NA	DUF1071
UHGV-1529186_33	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1529186_35	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1529186_35	UniRef90	UniRef90_A0A173ZLG5	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1529186_35	eggNOG-mapper	1235797.C816_04224	DNA binding	NA
UHGV-1529186_35	Pfam	PF20188	NA	DUF6551
UHGV-1529186_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1529186_35	Structural annotation	PF20188, MF_02015, TIGR04172, COG1475	NA	NA
UHGV-1529186_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1529186_36	PHROG	phrog_3264	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1529186_36	UniRef90	UniRef90_A0A6N9PUZ3	Chromosome partitioning protein ParB	NA
UHGV-1529186_36	eggNOG-mapper	1235797.C816_04223	ParB-like nuclease domain	NA
UHGV-1529186_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1529186_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1529186_40	PHROG	phrog_1090	NA	unknown function
UHGV-1529186_40	UniRef90	UniRef90_UPI000C06B978	CRISPR-associated protein Cas2	NA
UHGV-1529186_40	eggNOG-mapper	324057.Pjdr2_1651	NA	NA
UHGV-1529186_42	UniRef90	UniRef90_UPI001C6436C5	helix-turn-helix domain-containing protein	NA
UHGV-1529186_42	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-1529186_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1529186_43	UniRef90	UniRef90_UPI001959A3A5	helix-turn-helix transcriptional regulator	NA
UHGV-1529186_43	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-1529186_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1529186_43	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1529186_43	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1529186_44	PHROG	phrog_20936	NA	unknown function
UHGV-1529186_46	eggNOG-mapper	1123401.JHYQ01000012_gene2901	NA	NA
UHGV-1529186_48	PHROG	phrog_2384	NA	unknown function
UHGV-1529186_48	eggNOG-mapper	32057.KB217473_gene7786	P63C domain	NA
UHGV-1529186_49	PHROG	phrog_5783	NA	unknown function
UHGV-1529186_49	UniRef90	UniRef90_A0A564SC74	NYN domain protein	NA
UHGV-1529186_49	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-1529186_49	Pfam	PF01936	NYN domain	NYN
UHGV-1529186_49	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1529186_49	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1529186_50	KOfam	K14059	int; integrase	NA
UHGV-1529186_50	PHROG	phrog_1	integrase	integration and excision
UHGV-1529186_50	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-1529186_50	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-1529186_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1529186_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1529186_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA