UHGV-1530052

Genome information

Genome length 25,205 bps

CDS count 31

Completeness 66.53% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1530052
vOTU ID	vOTU-036446
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0217341
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.13
Jumbo phage	No

Genome content
Genome length	25,205 bps
GC content	43.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.66%
Average CDS length	771.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1530052_1	PHROG	phrog_121	NA	unknown function
UHGV-1530052_1	UniRef90	UniRef90_UPI001912676F	NA	NA
UHGV-1530052_1	eggNOG-mapper	936580.HMPREF1516_0729	NA	NA
UHGV-1530052_1	Pfam	PF07852	NA	DUF1642
UHGV-1530052_2	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1530052_2	UniRef90	UniRef90_UPI00191316F6	helix-turn-helix domain-containing protein	NA
UHGV-1530052_2	eggNOG-mapper	85154.O34051_BPO12	sequence-specific DNA binding	NA
UHGV-1530052_2	Structural annotation	PF01503, MF_01019, NF007113, COG1694	NA	NA
UHGV-1530052_3	PHROG	phrog_884	NA	unknown function
UHGV-1530052_3	UniRef90	UniRef90_UPI0019132CD2	NA	NA
UHGV-1530052_3	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-1530052_3	Pfam	PF07116	NA	DUF1372
UHGV-1530052_3	Structural annotation	PF07116, COG3585	NA	NA
UHGV-1530052_4	PHROG	phrog_98	NA	unknown function
UHGV-1530052_4	UniRef90	UniRef90_W1UXU2	TIGR01671 family protein	NA
UHGV-1530052_4	eggNOG-mapper	1005705.HMPREF9967_1029	YopX protein	NA
UHGV-1530052_4	Pfam	PF09643	YopX protein	YopX
UHGV-1530052_4	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1530052_4	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1530052_5	PHROG	phrog_1814	NA	unknown function
UHGV-1530052_5	UniRef90	UniRef90_T0UT16	NA	NA
UHGV-1530052_5	Pfam	PF07067	NA	DUF1340
UHGV-1530052_5	Structural annotation	PF07067	NA	NA
UHGV-1530052_6	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1530052_6	UniRef90	UniRef90_O34055	Putative autolysin regulatory protein ArpU	NA
UHGV-1530052_6	eggNOG-mapper	173707.Q938L8_9CAUD	NA	NA
UHGV-1530052_6	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1530052_6	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1530052_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1530052_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1530052_7	UniRef90	UniRef90_A0A2C5WJ26	Terminase	NA
UHGV-1530052_7	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-1530052_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1530052_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1530052_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1530052_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1530052_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1530052_8	UniRef90	UniRef90_A0A2C5WCW2	PBSX family phage terminase large subunit	NA
UHGV-1530052_8	eggNOG-mapper	646413.C5IUJ1_9CAUD	Pfam:Terminase_3C	NA
UHGV-1530052_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1530052_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1530052_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1530052_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1530052_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-1530052_9	UniRef90	UniRef90_UPI0011703CB6	phage portal protein	NA
UHGV-1530052_9	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1530052_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1530052_9	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1530052_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1530052_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1530052_10	UniRef90	UniRef90_A0A564TRG6	Phage minor capsid protein 2	NA
UHGV-1530052_10	eggNOG-mapper	646413.C5IUJ3_9CAUD	Phage minor capsid protein 2	NA
UHGV-1530052_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1530052_10	Structural annotation	PF06152	NA	NA
UHGV-1530052_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1530052_11	UniRef90	UniRef90_A0A3S4MNS5	Putative scaffolding protein	NA
UHGV-1530052_11	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1530052_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1530052_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-1530052_12	UniRef90	UniRef90_C5IUJ5	Major head protein	NA
UHGV-1530052_12	eggNOG-mapper	646413.C5IUJ5_9CAUD	peptidase activity	NA
UHGV-1530052_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1530052_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1530052_13	UniRef90	UniRef90_A0A3S4QL55	Transcription termination factor	NA
UHGV-1530052_13	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1530052_13	COG	COG0292	Ribosomal protein L20	NA
UHGV-1530052_13	Structural annotation	PF07498	NA	NA
UHGV-1530052_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1530052_14	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-1530052_14	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-1530052_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1530052_15	UniRef90	UniRef90_A0A2C5WI04	Minor capsid protein	NA
UHGV-1530052_15	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1530052_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1530052_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1530052_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1530052_16	UniRef90	UniRef90_UPI00093F38D1	minor capsid protein	NA
UHGV-1530052_16	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-1530052_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1530052_16	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1530052_17	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1530052_17	UniRef90	UniRef90_A0A2C5WHK7	Capsid protein	NA
UHGV-1530052_17	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1530052_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1530052_17	Structural annotation	PF12691	NA	NA
UHGV-1530052_18	PHROG	phrog_820	major tail protein	tail
UHGV-1530052_18	UniRef90	UniRef90_A0A448A8F6	Tail shaft protein	NA
UHGV-1530052_18	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-1530052_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1530052_19	PHROG	phrog_1061	NA	unknown function
UHGV-1530052_19	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1530052_19	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1530052_19	Structural annotation	PF10666	NA	NA
UHGV-1530052_20	PHROG	phrog_706	NA	unknown function
UHGV-1530052_20	UniRef90	UniRef90_A0A448A9A1	NA	NA
UHGV-1530052_20	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1530052_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1530052_20	Structural annotation	PF06854	NA	NA
UHGV-1530052_21	PHROG	phrog_1204	tail protein	tail
UHGV-1530052_21	UniRef90	UniRef90_UPI0011691D31	tape measure protein	NA
UHGV-1530052_21	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-1530052_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1530052_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1530052_22	UniRef90	UniRef90_A0A564TR06	Phage tail protein	NA
UHGV-1530052_22	eggNOG-mapper	646413.C5IUK4_9CAUD	NA	NA
UHGV-1530052_22	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1530052_23	PHROG	phrog_3558	tail protein	tail
UHGV-1530052_23	UniRef90	UniRef90_A0A564TQX2	GBS Bsp-like repeat protein	NA
UHGV-1530052_23	eggNOG-mapper	646413.C5IUK5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1530052_23	Pfam	PF08481	GBS Bsp-like repeat	GBS_Bsp-like
UHGV-1530052_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1530052_23	Structural annotation	PF14594, PF08481, TIGR01665, COG4926, COG3330	NA	NA
UHGV-1530052_24	PHROG	phrog_17240	NA	unknown function
UHGV-1530052_24	UniRef90	UniRef90_A0A8B1YVU1	SGNH/GDSL hydrolase family protein	NA
UHGV-1530052_24	eggNOG-mapper	1349822.NSB1T_12060	NA	NA
UHGV-1530052_24	Structural annotation	PF16255, PF07100, NF007403	NA	NA
UHGV-1530052_25	PHROG	phrog_4257	NA	unknown function
UHGV-1530052_25	UniRef90	UniRef90_A0A1L2JYP2	Transcription termination factor	NA
UHGV-1530052_25	eggNOG-mapper	1035189.HMPREF9954_0324	NA	NA
UHGV-1530052_26	PHROG	phrog_33625	holin	lysis
UHGV-1530052_26	UniRef90	UniRef90_A0A564TQX3	Bacteriophage holin	NA
UHGV-1530052_26	eggNOG-mapper	1123309.AQYB01000026_gene185	Bacteriophage holin	NA
UHGV-1530052_26	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1530052_26	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1530052_26	COG	COG5546	NA	NA
UHGV-1530052_26	Structural annotation	COG5546	NA	NA
UHGV-1530052_27	PHROG	phrog_998	endolysin	lysis
UHGV-1530052_27	UniRef90	UniRef90_A0A564TQV0	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1530052_27	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1530052_27	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1530052_27	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-1530052_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1530052_27	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-1530052_28	UniRef90	UniRef90_A0A564TQW9	N-terminal Ras-GEF domain-containing protein	NA
UHGV-1530052_29	PHROG	phrog_2277	NA	unknown function
UHGV-1530052_29	eggNOG-mapper	764291.STRUR_0112	NA	NA
UHGV-1530052_31	KOfam	K02245	comGC; competence protein ComGC	NA
UHGV-1530052_31	UniRef90	UniRef90_Q5M2G0	Late competence protein, exogenous DNA-binding protein	NA
UHGV-1530052_31	eggNOG-mapper	1046629.Ssal_00144	Required for transformation and DNA binding	NA
UHGV-1530052_31	NCBIFam	NF040999.1	competence type IV pilus major pilin ComGC	NA
UHGV-1530052_31	COG	COG4537	Competence protein ComGC	NA
UHGV-1530052_31	Structural annotation	NF040999, COG4537	NA	NA