UHGV-1530836

Genome information

Genome length 29,733 bps

CDS count 30

Completeness 65.51% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-1530836
vOTU ID	vOTU-022891
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242567
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.49
Jumbo phage	No

Genome content
Genome length	29,733 bps
GC content	57.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	96.90%
Average CDS length	962.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1530836_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1530836_1	UniRef90	UniRef90_A0A4R7L8A6	Phage terminase small subunit	NA
UHGV-1530836_1	eggNOG-mapper	1120978.KB894083_gene916	NA	NA
UHGV-1530836_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1530836_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1530836_2	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1530836_2	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1530836_2	UniRef90	UniRef90_A0A2Z4I5G3	DNA modification methylase	NA
UHGV-1530836_2	eggNOG-mapper	1127695.HMPREF9163_00429	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1530836_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1530836_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1530836_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1530836_2	COG	COG0863	DNA modification methylase	NA
UHGV-1530836_2	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1530836_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1530836_3	UniRef90	UniRef90_A0A1X1Q387	Phage terminase large subunit	NA
UHGV-1530836_3	eggNOG-mapper	1408423.JHYA01000001_gene914	terminase, large subunit	NA
UHGV-1530836_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1530836_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1530836_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1530836_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1530836_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1530836_4	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1530836_4	UniRef90	UniRef90_A0A7C6FPE7	HNH endonuclease	NA
UHGV-1530836_4	eggNOG-mapper	1235800.C819_02956	HNH endonuclease	NA
UHGV-1530836_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1530836_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1530836_4	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1530836_7	eggNOG-mapper	545697.HMPREF0216_00926	NA	NA
UHGV-1530836_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-1530836_8	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-1530836_8	eggNOG-mapper	994573.T472_0214085	Phage portal protein, HK97 family	NA
UHGV-1530836_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1530836_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1530836_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1530836_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1530836_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1530836_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1530836_9	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1530836_9	eggNOG-mapper	1280681.AUJZ01000038_gene333	Serine dehydrogenase proteinase	NA
UHGV-1530836_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1530836_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1530836_9	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1530836_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1530836_10	UniRef90	UniRef90_A0A1Q6PTS2	Capsid protein	NA
UHGV-1530836_10	eggNOG-mapper	1499680.CCFE01000031_gene3759	Phage capsid family	NA
UHGV-1530836_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1530836_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1530836_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1530836_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1530836_11	PHROG	phrog_12102	NA	unknown function
UHGV-1530836_11	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-1530836_11	eggNOG-mapper	665956.HMPREF1032_02264	NA	NA
UHGV-1530836_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1530836_12	UniRef90	UniRef90_A0A2V2FK03	Phage gp6-like head-tail connector protein	NA
UHGV-1530836_12	eggNOG-mapper	1121116.KB894776_gene1858	Phage gp6-like head-tail connector protein	NA
UHGV-1530836_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1530836_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1530836_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1530836_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-1530836_13	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-1530836_13	eggNOG-mapper	994573.T472_0211015	head-tail adaptor	NA
UHGV-1530836_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1530836_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1530836_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1530836_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1530836_14	Structural annotation	PF05657	NA	NA
UHGV-1530836_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1530836_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1530836_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1530836_15	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1530836_16	PHROG	phrog_88	major tail protein	tail
UHGV-1530836_16	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-1530836_16	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-1530836_16	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1530836_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1530836_16	COG	COG5276	NA	NA
UHGV-1530836_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1530836_17	PHROG	phrog_8680	NA	unknown function
UHGV-1530836_17	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-1530836_17	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1530836_17	Pfam	PF14386	NA	DUF4417
UHGV-1530836_17	Structural annotation	PF14386	NA	NA
UHGV-1530836_18	eggNOG-mapper	679192.HMPREF9013_1305	Phage minor capsid protein 2	NA
UHGV-1530836_22	KOfam	K12478	EEA1; early endosome antigen 1	NA
UHGV-1530836_22	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1530836_22	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-1530836_22	eggNOG-mapper	1121864.OMO_01316	Phage-related minor tail protein	NA
UHGV-1530836_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1530836_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1530836_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1530836_22	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1530836_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1530836_23	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-1530836_23	eggNOG-mapper	931276.Cspa_c07550	tail component	NA
UHGV-1530836_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1530836_23	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1530836_24	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1530836_24	UniRef90	UniRef90_A0A1Q6PU45	SH3b domain-containing protein	NA
UHGV-1530836_24	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-1530836_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1530836_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1530836_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1530836_24	COG	COG4926	Phage-related protein	NA
UHGV-1530836_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1530836_25	PHROG	phrog_3267	tail protein	tail
UHGV-1530836_25	UniRef90	UniRef90_A0A3T0II28	Putative tail protein	NA
UHGV-1530836_25	eggNOG-mapper	476272.RUMHYD_01485	candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01238	NA
UHGV-1530836_25	Structural annotation	PF16407, PF03921, PF03404, PF07354, MF_04116, NF010681, COG3291	NA	NA
UHGV-1530836_26	PHROG	phrog_11987	NA	unknown function
UHGV-1530836_26	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-1530836_26	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1530836_27	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1530836_27	UniRef90	UniRef90_A0A090I2J2	Chitin-binding domain of Chi A1-like proteins	NA
UHGV-1530836_27	eggNOG-mapper	1195236.CTER_2813	Belongs to the glycosyl hydrolase 18 family	NA
UHGV-1530836_27	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1530836_27	COG	COG3325	Chitinase, GH18 family	NA
UHGV-1530836_28	PHROG	phrog_199	holin	lysis
UHGV-1530836_28	UniRef90	UniRef90_A0A1Q6PTT3	Holin	NA
UHGV-1530836_28	eggNOG-mapper	1203606.HMPREF1526_00583	toxin secretion phage lysis holin	NA
UHGV-1530836_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1530836_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1530836_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1530836_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1530836_29	PHROG	phrog_2649	endolysin	lysis
UHGV-1530836_29	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-1530836_29	eggNOG-mapper	485916.Dtox_1506	NlpC p60 family	NA
UHGV-1530836_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1530836_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1530836_29	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA