UHGV-1530882

Genome information

Genome length 19,691 bps

CDS count 20

Completeness 58.89% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-1530882
vOTU ID	vOTU-025704
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0149199
BioSample	SAMEA2738137
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.01
Jumbo phage	No

Genome content
Genome length	19,691 bps
GC content	41.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	95.50%
Average CDS length	942.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1530882_1	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-1530882_1	PHROG	phrog_1110	endolysin	lysis
UHGV-1530882_1	UniRef90	UniRef90_A0A0A0YV41	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1530882_1	eggNOG-mapper	365659.smi_0478	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1530882_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1530882_1	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1530882_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1530882_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1530882_1	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-1530882_2	PHROG	phrog_608	holin	lysis
UHGV-1530882_2	UniRef90	UniRef90_A0A0Y3MR10	Phage holin, LL-H family	NA
UHGV-1530882_2	eggNOG-mapper	936580.HMPREF1516_0703	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1530882_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1530882_2	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1530882_3	PHROG	phrog_199	holin	lysis
UHGV-1530882_3	UniRef90	UniRef90_A0A3R9KVL9	Holin family protein	NA
UHGV-1530882_3	eggNOG-mapper	413066.A1EAB5_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1530882_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1530882_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1530882_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1530882_4	PHROG	phrog_1554	NA	unknown function
UHGV-1530882_4	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-1530882_4	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-1530882_4	Structural annotation	PF07104	NA	NA
UHGV-1530882_5	PHROG	phrog_12683	NA	unknown function
UHGV-1530882_6	PHROG	phrog_1210	PblB-type receptor binding	other
UHGV-1530882_6	UniRef90	UniRef90_A0A2N6PNN1	Peptidase S74 domain-containing protein	NA
UHGV-1530882_6	eggNOG-mapper	1566990.A0A0A0YV37_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1530882_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1530882_6	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1530882_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1530882_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1530882_6	Structural annotation	PF14594, PF00629, PF10528, TIGR01665, NF033675, NF038393, COG4926	NA	NA
UHGV-1530882_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1530882_7	UniRef90	UniRef90_UPI001EFF5C66	phage tail protein	NA
UHGV-1530882_7	eggNOG-mapper	1123314.AUIO01000016_gene850	NA	NA
UHGV-1530882_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1530882_8	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1530882_8	UniRef90	UniRef90_A0A4D6B1B7	Tail length tape-measure protein	NA
UHGV-1530882_8	eggNOG-mapper	644007.C5J971_9CAUD	peptidoglycan catabolic process	NA
UHGV-1530882_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1530882_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1530882_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1530882_9	PHROG	phrog_709	NA	unknown function
UHGV-1530882_9	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1530882_9	eggNOG-mapper	1035184.HMPREF1042_1216	NA	NA
UHGV-1530882_9	Structural annotation	PF11836	NA	NA
UHGV-1530882_10	PHROG	phrog_88	major tail protein	tail
UHGV-1530882_10	UniRef90	UniRef90_A0A7G1ITF4	Phage tail protein	NA
UHGV-1530882_10	eggNOG-mapper	1005705.HMPREF9967_1048	phage major tail protein, phi13 family	NA
UHGV-1530882_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1530882_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1530882_11	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1530882_11	eggNOG-mapper	644007.C5J968_9CAUD	aminopeptidase activity	NA
UHGV-1530882_11	Structural annotation	PF20765	NA	NA
UHGV-1530882_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1530882_12	UniRef90	UniRef90_UPI00195EB731	HK97 gp10 family phage protein	NA
UHGV-1530882_12	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-1530882_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1530882_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1530882_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1530882_13	UniRef90	UniRef90_UPI001956060B	phage head closure protein	NA
UHGV-1530882_13	eggNOG-mapper	1005705.HMPREF9967_1045	head-tail adaptor	NA
UHGV-1530882_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1530882_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1530882_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1530882_14	PHROG	phrog_2550	NA	unknown function
UHGV-1530882_14	UniRef90	UniRef90_A0A0T8BHT1	NA	NA
UHGV-1530882_14	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1530882_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1530882_15	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1530882_15	UniRef90	UniRef90_A0A098ANL2	NA	NA
UHGV-1530882_15	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-1530882_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-1530882_16	UniRef90	UniRef90_UPI00066D2D6B	phage major capsid protein	NA
UHGV-1530882_16	eggNOG-mapper	1316408.HSISM1_1054	capsid protein	NA
UHGV-1530882_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1530882_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1530882_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1530882_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1530882_17	KOfam	K06904	NA	NA
UHGV-1530882_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1530882_17	UniRef90	UniRef90_A0A098ANM2	Bacteriophage maturation protease	NA
UHGV-1530882_17	eggNOG-mapper	1005705.HMPREF9967_1041	Caudovirus prohead serine protease	NA
UHGV-1530882_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1530882_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1530882_17	COG	COG3740	Phage head maturation protease	NA
UHGV-1530882_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1530882_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-1530882_18	UniRef90	UniRef90_A0A7G1IQG3	Phage portal protein	NA
UHGV-1530882_18	eggNOG-mapper	1123314.AUIO01000016_gene838	Phage portal protein	NA
UHGV-1530882_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1530882_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1530882_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1530882_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1530882_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1530882_19	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-1530882_19	eggNOG-mapper	644007.C5J959_9CAUD	Phage Terminase	NA
UHGV-1530882_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1530882_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1530882_19	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1530882_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1530882_20	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-1530882_20	eggNOG-mapper	1005705.HMPREF9967_1038	Phage terminase, small subunit	NA
UHGV-1530882_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1530882_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1530882_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA