UHGV-1530929

Genome information

Genome length 28,048 bps

CDS count 29

Completeness 53.25% (medium-quality)

geNomad score 0.8782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1530929
vOTU ID	vOTU-016274
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0276235
BioSample	SAMEA2737822
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.8782
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.28
Jumbo phage	No

Genome content
Genome length	28,048 bps
GC content	45.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.48%
Average CDS length	936.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1530929_1	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1530929_1	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-1530929_1	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-1530929_1	Pfam	PF05017	TMP repeat	TMP
UHGV-1530929_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1530929_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1530929_2	PHROG	phrog_23201	NA	unknown function
UHGV-1530929_2	UniRef90	UniRef90_R6M2K3	SLH domain-containing protein	NA
UHGV-1530929_2	eggNOG-mapper	1145276.T479_01675	LysM domain	NA
UHGV-1530929_2	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1530929_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1530929_3	PHROG	phrog_400	tail protein	tail
UHGV-1530929_3	UniRef90	UniRef90_A0A1C5PJS5	Amidase_5 domain-containing protein	NA
UHGV-1530929_3	eggNOG-mapper	1121090.KB894702_gene1246	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-1530929_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-1530929_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1530929_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1530929_4	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-1530929_5	PHROG	phrog_120	baseplate protein	tail
UHGV-1530929_5	eggNOG-mapper	1449063.JMLS01000016_gene945	NA	NA
UHGV-1530929_5	Pfam	PF10934	NA	DUF2634
UHGV-1530929_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1530929_5	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1530929_6	PHROG	phrog_6	baseplate protein	tail
UHGV-1530929_6	UniRef90	UniRef90_A0A416D4L9	Baseplate j family protein	NA
UHGV-1530929_6	eggNOG-mapper	1449126.JQKL01000051_gene3155	Baseplate J-like protein	NA
UHGV-1530929_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1530929_6	COG	COG3299	NA	NA
UHGV-1530929_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1530929_7	PHROG	phrog_521	tail protein	tail
UHGV-1530929_7	UniRef90	UniRef90_UPI001F319AD3	YmfQ family protein	NA
UHGV-1530929_7	eggNOG-mapper	1121346.KB899820_gene2841	NA	NA
UHGV-1530929_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1530929_7	COG	COG3778	NA	NA
UHGV-1530929_7	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1530929_8	PHROG	phrog_32680	tail fiber protein	tail
UHGV-1530929_9	PHROG	phrog_19111	NA	unknown function
UHGV-1530929_9	eggNOG-mapper	1297617.JPJD01000034_gene670	NA	NA
UHGV-1530929_9	Structural annotation	PF16756, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-1530929_10	eggNOG-mapper	1297617.JPJD01000034_gene669	NA	NA
UHGV-1530929_11	PHROG	phrog_134	NA	unknown function
UHGV-1530929_11	UniRef90	UniRef90_A0A3E2WBQ5	XkdX family protein	NA
UHGV-1530929_11	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1530929_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1530929_11	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1530929_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1530929_12	PHROG	phrog_16573	NA	unknown function
UHGV-1530929_12	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1530929_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1530929_14	PHROG	phrog_14242	major head protein	head and packaging
UHGV-1530929_14	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-1530929_14	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-1530929_14	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1530929_14	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-1530929_16	Structural annotation	PF20387	NA	NA
UHGV-1530929_17	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1530929_17	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1530929_17	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-1530929_21	Structural annotation	PF09144, NF038393	NA	NA
UHGV-1530929_22	PHROG	phrog_32680	tail fiber protein	tail
UHGV-1530929_22	eggNOG-mapper	1380600.AUYN01000010_gene879	Hep Hag repeat protein	NA
UHGV-1530929_22	COG	COG5295	Autotransporter adhesin	NA
UHGV-1530929_25	PHROG	phrog_1863	NA	unknown function
UHGV-1530929_25	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1530929_27	PHROG	phrog_263	holin	lysis
UHGV-1530929_27	UniRef90	UniRef90_UPI001F05AFD4	phage holin	NA
UHGV-1530929_27	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-1530929_27	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1530929_27	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1530929_27	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1530929_28	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-1530929_28	UniRef90	UniRef90_A0A2D8CFG9	Pept_C1 domain-containing protein	NA
UHGV-1530929_28	eggNOG-mapper	421072.IO89_07550	Papain family cysteine protease	NA
UHGV-1530929_28	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-1530929_28	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1530929_28	COG	COG4870	Cysteine protease, C1A family	NA
UHGV-1530929_28	Structural annotation	PF00112, PF00395, COG4870	NA	NA
UHGV-1530929_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1530929_29	PHROG	phrog_670	endolysin	lysis
UHGV-1530929_29	UniRef90	UniRef90_UPI001C119825	phosphodiester glycosidase family protein	NA
UHGV-1530929_29	eggNOG-mapper	857293.CAAU_0999	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1530929_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1530929_29	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1530929_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1530929_29	Structural annotation	PF09992, PF01510, MF_04111, NF008758, COG5632	NA	NA