UHGV-1531348

Genome information

Genome length 32,319 bps

CDS count 45

Completeness 53.70% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1531348
vOTU ID	vOTU-025706
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242375
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.48
Jumbo phage	No

Genome content
Genome length	32,319 bps
GC content	41.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.13%
Average CDS length	667.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1531348_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1531348_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1531348_1	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-1531348_1	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-1531348_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1531348_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1531348_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1531348_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1531348_3	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-1531348_3	Pfam	PF13542	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
UHGV-1531348_3	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-1531348_4	Structural annotation	PF04936	NA	NA
UHGV-1531348_5	PHROG	phrog_9804	NA	unknown function
UHGV-1531348_5	UniRef90	UniRef90_A0A1C5LKA4	Inhibitor_G39P domain-containing protein	NA
UHGV-1531348_5	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-1531348_5	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1531348_5	Structural annotation	PF11417	NA	NA
UHGV-1531348_6	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1531348_6	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-1531348_6	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-1531348_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1531348_6	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1531348_8	PHROG	phrog_19106	NA	unknown function
UHGV-1531348_8	UniRef90	UniRef90_R7BHG7	GIY-YIG domain-containing protein	NA
UHGV-1531348_8	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1531348_8	Structural annotation	TIGR01453	NA	NA
UHGV-1531348_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1531348_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1531348_11	UniRef90	UniRef90_R9KL32	Single-stranded DNA-binding protein	NA
UHGV-1531348_11	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1531348_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1531348_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1531348_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1531348_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1531348_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1531348_13	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-1531348_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1531348_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1531348_14	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1531348_14	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-1531348_14	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1531348_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1531348_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1531348_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1531348_16	PHROG	phrog_4433	NA	unknown function
UHGV-1531348_16	UniRef90	UniRef90_A0A1C6I166	Collagen triple helix repeat (20 copies)	NA
UHGV-1531348_16	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1531348_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1531348_16	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1531348_17	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1531348_17	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1531348_17	UniRef90	UniRef90_UPI001BC4CEB0	MBL fold metallo-hydrolase	NA
UHGV-1531348_17	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1531348_17	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1531348_17	dbAPIS	APIS058	NA	NA
UHGV-1531348_17	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1531348_17	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1531348_18	KOfam	K06940	NA	NA
UHGV-1531348_18	PHROG	phrog_32498	NA	unknown function
UHGV-1531348_18	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-1531348_18	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-1531348_18	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-1531348_18	Structural annotation	PF03692	NA	NA
UHGV-1531348_20	PHROG	phrog_25456	NA	unknown function
UHGV-1531348_21	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1531348_21	UniRef90	UniRef90_UPI001A8D427A	recombinase RecT	NA
UHGV-1531348_21	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1531348_21	Pfam	PF03837	RecT family	RecT
UHGV-1531348_21	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1531348_22	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1531348_22	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1531348_22	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-1531348_22	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-1531348_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1531348_22	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1531348_23	UniRef90	UniRef90_R6Q349	Single-strand binding protein/Primosomal replication protein n	NA
UHGV-1531348_23	eggNOG-mapper	1414720.CBYM010000067_gene3415	PFAM single-strand binding protein	NA
UHGV-1531348_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1531348_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1531348_23	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1531348_26	PHROG	phrog_19890	NA	unknown function
UHGV-1531348_26	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-1531348_26	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-1531348_26	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1531348_26	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1531348_27	PHROG	phrog_2316	NA	unknown function
UHGV-1531348_27	UniRef90	UniRef90_A0A8I0AF49	NA	NA
UHGV-1531348_27	eggNOG-mapper	1280698.AUJS01000007_gene1022	NA	NA
UHGV-1531348_27	Pfam	PF16475	NA	DUF5052
UHGV-1531348_27	Structural annotation	PF16475	NA	NA
UHGV-1531348_28	PHROG	phrog_14105	NA	unknown function
UHGV-1531348_28	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-1531348_28	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-1531348_28	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-1531348_28	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1531348_30	UniRef90	UniRef90_UPI000DA61890	antA/AntB antirepressor family protein	NA
UHGV-1531348_30	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-1531348_30	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1531348_31	Structural annotation	PF12729	NA	NA
UHGV-1531348_33	UniRef90	UniRef90_UPI001D0090A6	NA	NA
UHGV-1531348_33	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-1531348_33	Pfam	PF05339	NA	DUF739
UHGV-1531348_33	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1531348_33	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1531348_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1531348_34	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-1531348_34	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-1531348_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1531348_34	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-1531348_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1531348_35	PHROG	phrog_12727	endolysin	lysis
UHGV-1531348_35	UniRef90	UniRef90_A0A1Y4IK94	SPOR domain-containing protein	NA
UHGV-1531348_35	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-1531348_35	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1531348_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1531348_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1531348_35	Structural annotation	PF01832, PF08230, NF038016, TIGR02594, COG1705, COG4322	NA	NA
UHGV-1531348_36	eggNOG-mapper	742735.HMPREF9467_00753	NA	NA
UHGV-1531348_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1531348_37	PHROG	phrog_20274	NA	unknown function
UHGV-1531348_37	UniRef90	UniRef90_A0A1C5ZRD7	Predicted membrane protein	NA
UHGV-1531348_37	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-1531348_37	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-1531348_37	COG	COG4905	NA	NA
UHGV-1531348_37	Structural annotation	PF06541, COG4905	NA	NA
UHGV-1531348_39	eggNOG-mapper	397291.C804_01137	NA	NA
UHGV-1531348_39	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-1531348_40	PHROG	phrog_18725	NA	unknown function
UHGV-1531348_40	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1531348_41	PHROG	phrog_13879	NA	unknown function
UHGV-1531348_41	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1531348_41	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1531348_42	PHROG	phrog_1194	NA	unknown function
UHGV-1531348_42	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1531348_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1531348_43	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1531348_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1531348_43	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-1531348_43	COG	COG1511	NA	NA