UHGV-1531922

Genome information

Genome length 21,896 bps

CDS count 22

Completeness 54.27% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-1531922
vOTU ID	vOTU-022803
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0165936
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.82
Jumbo phage	No

Genome content
Genome length	21,896 bps
GC content	52.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	93.10%
Average CDS length	927.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1531922_2	PHROG	phrog_1591	tail fiber protein	tail
UHGV-1531922_2	UniRef90	UniRef90_A0A800YIR7	Phage tail protein	NA
UHGV-1531922_2	eggNOG-mapper	906669.G8C7R8_9CAUD	NA	NA
UHGV-1531922_2	Structural annotation	PF12195	NA	NA
UHGV-1531922_3	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1531922_3	UniRef90	UniRef90_UPI0015E7AA44	NA	NA
UHGV-1531922_3	eggNOG-mapper	716541.ECL_01716	NA	NA
UHGV-1531922_3	Pfam	PF20051	NA	DUF6453
UHGV-1531922_3	Structural annotation	PF20051	NA	NA
UHGV-1531922_4	PHROG	phrog_2589	tail protein	tail
UHGV-1531922_4	UniRef90	UniRef90_A0A800YHX2	Host specificity protein	NA
UHGV-1531922_4	eggNOG-mapper	1115515.EV102420_11_00020	Fibronectin type 3 domain	NA
UHGV-1531922_4	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1531922_4	Pfam	PF09327	NA	DUF1983
UHGV-1531922_4	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1531922_4	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-1531922_5	PHROG	phrog_32	tail assembly protein	tail
UHGV-1531922_5	UniRef90	UniRef90_A0A330DX40	Tail assembly protein	NA
UHGV-1531922_5	eggNOG-mapper	1115515.EV102420_11_00030	Bacteriophage lambda tail assembly protein I	NA
UHGV-1531922_5	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-1531922_5	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1531922_5	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1531922_6	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1531922_6	PHROG	phrog_30	minor tail protein	tail
UHGV-1531922_6	UniRef90	UniRef90_A0A0F1A581	Peptidase P60	NA
UHGV-1531922_6	eggNOG-mapper	1115515.EV102420_11_00040	Corresponds to locus_tag	NA
UHGV-1531922_6	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-1531922_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1531922_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1531922_6	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1531922_7	PHROG	phrog_18	minor tail protein	tail
UHGV-1531922_7	UniRef90	UniRef90_A0A2H9EHC2	Phage minor tail protein L	NA
UHGV-1531922_7	eggNOG-mapper	1115515.EV102420_11_00050	Phage minor tail protein L	NA
UHGV-1531922_7	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1531922_7	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1531922_7	COG	COG4672	Phage tail protein	NA
UHGV-1531922_7	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1531922_8	PHROG	phrog_14	minor tail protein	tail
UHGV-1531922_8	UniRef90	UniRef90_A0A7H0MAW3	Phage tail protein	NA
UHGV-1531922_8	eggNOG-mapper	1115515.EV102420_11_00060	Phage minor tail protein	NA
UHGV-1531922_8	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1531922_8	COG	COG4718	Phage tail protein	NA
UHGV-1531922_8	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1531922_9	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1531922_9	UniRef90	UniRef90_UPI001D0C0486	phage tail tape measure protein	NA
UHGV-1531922_9	eggNOG-mapper	35703.DQ02_21640	tape measure protein	NA
UHGV-1531922_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1531922_9	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-1531922_9	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1531922_9	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1531922_9	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1531922_9	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1531922_10	PHROG	phrog_2320	NA	unknown function
UHGV-1531922_10	Structural annotation	PF07430	NA	NA
UHGV-1531922_11	PHROG	phrog_14766	tail protein	tail
UHGV-1531922_11	UniRef90	UniRef90_A0A6S5JNV0	Phage tail protein	NA
UHGV-1531922_11	eggNOG-mapper	1147157.K7PJX0_9CAUD	NA	NA
UHGV-1531922_11	Pfam	PF13227	NA	DUF4035
UHGV-1531922_11	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-1531922_12	PHROG	phrog_14766	tail protein	tail
UHGV-1531922_12	UniRef90	UniRef90_A0A411GER6	Phage tail protein	NA
UHGV-1531922_12	eggNOG-mapper	911008.GLAD_04137	tail assembly chaperone	NA
UHGV-1531922_12	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-1531922_12	Structural annotation	PF06222	NA	NA
UHGV-1531922_13	PHROG	phrog_11009	NA	unknown function
UHGV-1531922_13	UniRef90	UniRef90_K7P835	Major tail subunit	NA
UHGV-1531922_13	eggNOG-mapper	1147157.K7PHL2_9CAUD	NA	NA
UHGV-1531922_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1531922_13	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1531922_14	PHROG	phrog_347	tail terminator	connector
UHGV-1531922_14	UniRef90	UniRef90_A0A3S0P911	NA	NA
UHGV-1531922_14	eggNOG-mapper	37554.Q9MCS8_BPHK7	NA	NA
UHGV-1531922_14	Pfam	PF11367	NA	DUF3168
UHGV-1531922_14	Structural annotation	PF11367	NA	NA
UHGV-1531922_15	PHROG	phrog_23409	NA	unknown function
UHGV-1531922_15	UniRef90	UniRef90_A0A6G4LJN0	HK97 gp10 family phage protein	NA
UHGV-1531922_15	eggNOG-mapper	432201.K7P7Y7_9CAUD	exonuclease activity	NA
UHGV-1531922_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1531922_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1531922_15	Structural annotation	TIGR01725	NA	NA
UHGV-1531922_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-1531922_16	UniRef90	UniRef90_A0A0M3EWB3	Head-tail adaptor protein	NA
UHGV-1531922_16	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-1531922_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1531922_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1531922_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1531922_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1531922_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1531922_17	UniRef90	UniRef90_A0A8B2USY7	Phage gp6-like head-tail connector protein	NA
UHGV-1531922_17	eggNOG-mapper	1399774.JDWH01000035_gene2225	Phage gp6-like head-tail connector protein	NA
UHGV-1531922_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1531922_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1531922_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1531922_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1531922_18	UniRef90	UniRef90_A0A133LP05	Phage major capsid protein, HK97 family	NA
UHGV-1531922_18	eggNOG-mapper	1399774.JDWH01000035_gene2224	capsid protein	NA
UHGV-1531922_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1531922_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1531922_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1531922_18	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-1531922_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1531922_19	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-1531922_19	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1531922_19	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-1531922_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1531922_19	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1531922_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1531922_20	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-1531922_20	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-1531922_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1531922_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1531922_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1531922_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1531922_21	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-1531922_21	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-1531922_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1531922_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1531922_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1531922_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1531922_22	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-1531922_22	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-1531922_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1531922_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA