UHGV-1532112

Genome information

Genome length 40,421 bps

CDS count 65

Completeness 82.64% (medium-quality)

geNomad score 0.9613

Prediction confidence Confident

Genome information
Genome ID	UHGV-1532112
vOTU ID	vOTU-036096
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0280284
BioSample	SAMEA2338856
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9613
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.62
Jumbo phage	No

Genome content
Genome length	40,421 bps
GC content	58.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.02%
Average CDS length	560.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532112_1	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1532112_1	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-1532112_1	eggNOG-mapper	1408428.JNJP01000012_gene1133	NA	NA
UHGV-1532112_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1532112_2	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-1532112_2	eggNOG-mapper	90371.CY43_09625	NA	NA
UHGV-1532112_3	PHROG	phrog_1830	NA	unknown function
UHGV-1532112_3	eggNOG-mapper	1408428.JNJP01000012_gene1131	NA	NA
UHGV-1532112_3	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1532112_3	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1532112_4	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1532112_4	eggNOG-mapper	1408428.JNJP01000012_gene1130	domain protein	NA
UHGV-1532112_4	COG	COG1511	NA	NA
UHGV-1532112_4	Structural annotation	TIGR01760	NA	NA
UHGV-1532112_5	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-1532112_5	eggNOG-mapper	762376.AXYL_04636	NA	NA
UHGV-1532112_5	Structural annotation	PF21822	NA	NA
UHGV-1532112_10	PHROG	phrog_245	anti-repressor Ant	transcription regulation
UHGV-1532112_10	UniRef90	UniRef90_E5Y1X7	Bro-N domain-containing protein	NA
UHGV-1532112_10	eggNOG-mapper	563192.HMPREF0179_00186	BRO family, N-terminal domain	NA
UHGV-1532112_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1532112_10	COG	COG3617	Prophage antirepressor	NA
UHGV-1532112_10	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-1532112_11	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-1532112_11	UniRef90	UniRef90_Q8HAQ5	Gp03	NA
UHGV-1532112_11	eggNOG-mapper	762966.HMPREF9439_01045	NA	NA
UHGV-1532112_11	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-1532112_12	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1532112_12	UniRef90	UniRef90_A0A8J6YP97	NA	NA
UHGV-1532112_12	eggNOG-mapper	546268.NEISUBOT_05174	NA	NA
UHGV-1532112_12	Pfam	PF11863	NA	DUF3383
UHGV-1532112_12	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1532112_13	PHROG	phrog_1876	NA	unknown function
UHGV-1532112_13	eggNOG-mapper	546268.NEISUBOT_05173	NA	NA
UHGV-1532112_13	Structural annotation	PF16807	NA	NA
UHGV-1532112_14	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-1532112_14	UniRef90	UniRef90_UPI0013ECBB68	ORF6C domain-containing protein	NA
UHGV-1532112_14	eggNOG-mapper	411464.DESPIG_01325	P22_AR N-terminal domain	NA
UHGV-1532112_14	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-1532112_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1532112_14	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1532112_14	Structural annotation	PF10547, NF033622, COG3617	NA	NA
UHGV-1532112_15	PHROG	phrog_1912	head protein	head and packaging
UHGV-1532112_15	eggNOG-mapper	742823.HMPREF9465_00937	NA	NA
UHGV-1532112_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1532112_16	PHROG	phrog_222	tail protein	tail
UHGV-1532112_16	UniRef90	UniRef90_A0A379S604	Mu-like prophage protein gpG	NA
UHGV-1532112_16	eggNOG-mapper	1408428.JNJP01000012_gene1123	Phage virion morphogenesis protein	NA
UHGV-1532112_16	COG	COG5005	NA	NA
UHGV-1532112_17	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1532112_17	UniRef90	UniRef90_UPI00049759A7	NA	NA
UHGV-1532112_17	eggNOG-mapper	1408428.JNJP01000012_gene1122	NA	NA
UHGV-1532112_17	Pfam	PF13262	NA	DUF4054
UHGV-1532112_17	Structural annotation	PF13262	NA	NA
UHGV-1532112_18	PHROG	phrog_2085	NA	unknown function
UHGV-1532112_19	PHROG	phrog_264	major head protein	head and packaging
UHGV-1532112_19	UniRef90	UniRef90_UPI0004958FBA	NA	NA
UHGV-1532112_19	eggNOG-mapper	1408428.JNJP01000012_gene1117	Protein conserved in bacteria	NA
UHGV-1532112_19	Pfam	PF09950	NA	DUF2184
UHGV-1532112_19	COG	COG4834	NA	NA
UHGV-1532112_19	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-1532112_20	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-1532112_20	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-1532112_20	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1532112_21	KOfam	K09960	NA	NA
UHGV-1532112_21	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-1532112_21	UniRef90	UniRef90_UPI001D0A9CAD	NA	NA
UHGV-1532112_21	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-1532112_21	Pfam	PF09979	NA	DUF2213
UHGV-1532112_21	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1532112_21	COG	COG3566	NA	NA
UHGV-1532112_23	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1532112_23	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-1532112_23	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-1532112_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1532112_23	COG	COG2369	NA	NA
UHGV-1532112_23	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1532112_24	KOfam	K09961	NA	NA
UHGV-1532112_24	PHROG	phrog_146	portal protein	head and packaging
UHGV-1532112_24	UniRef90	UniRef90_UPI0009E09A57	NA	NA
UHGV-1532112_24	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-1532112_24	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1532112_24	COG	COG3567	NA	NA
UHGV-1532112_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1532112_25	UniRef90	UniRef90_UPI0009DEEE6C	phage terminase large subunit	NA
UHGV-1532112_25	eggNOG-mapper	1408428.JNJP01000012_gene1111	Terminase RNaseH-like domain	NA
UHGV-1532112_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1532112_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1532112_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1532112_25	COG	COG5362	Phage terminase large subunit	NA
UHGV-1532112_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1532112_26	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-1532112_26	UniRef90	UniRef90_UPI00057524D2	ubiquitin carboxyl-hydrolase	NA
UHGV-1532112_26	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-1532112_26	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1532112_29	eggNOG-mapper	457398.HMPREF0326_01528	NA	NA
UHGV-1532112_30	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1532112_30	PHROG	phrog_7	endolysin	lysis
UHGV-1532112_30	UniRef90	UniRef90_A0A316MU83	Lysozyme	NA
UHGV-1532112_30	eggNOG-mapper	1140.Synpcc7942_0756	cytolysis by virus of host cell	NA
UHGV-1532112_30	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1532112_30	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1532112_30	Structural annotation	MF_04110, COG3772	NA	NA
UHGV-1532112_33	PHROG	phrog_474	phosphofructokinase	other
UHGV-1532112_33	UniRef90	UniRef90_UPI001D0B8E43	NA	NA
UHGV-1532112_33	eggNOG-mapper	439235.Dalk_4583	NA	NA
UHGV-1532112_33	Pfam	PF19905	NA	DUF6378
UHGV-1532112_34	PHROG	phrog_824	NA	unknown function
UHGV-1532112_34	UniRef90	UniRef90_E5Y6D9	VRR-NUC domain-containing protein	NA
UHGV-1532112_34	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-1532112_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1532112_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1532112_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1532112_35	UniRef90	UniRef90_UPI001D076A8D	AAA family ATPase	NA
UHGV-1532112_35	eggNOG-mapper	1408428.JNJP01000012_gene1100	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1532112_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1532112_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1532112_35	Structural annotation	PF03796, PF00772, MF_04155, NF006443, COG0305	NA	NA
UHGV-1532112_36	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1532112_36	eggNOG-mapper	563192.HMPREF0179_00155	HNH endonuclease	NA
UHGV-1532112_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1532112_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1532112_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1532112_38	UniRef90	UniRef90_E5Y9T7	Anti-repressor protein	NA
UHGV-1532112_38	eggNOG-mapper	563192.HMPREF0179_02955	BRO family, N-terminal domain	NA
UHGV-1532112_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1532112_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1532112_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1532112_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1532112_39	eggNOG-mapper	1121438.JNJA01000009_gene4084	NA	NA
UHGV-1532112_39	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-1532112_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1532112_41	UniRef90	UniRef90_A0A2V2GKD2	Phage repressor protein	NA
UHGV-1532112_41	eggNOG-mapper	665942.HMPREF1022_00127	Peptidase S24-like	NA
UHGV-1532112_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1532112_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1532112_41	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1532112_44	eggNOG-mapper	1123504.JQKD01000018_gene2083	NA	NA
UHGV-1532112_49	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1532112_49	UniRef90	UniRef90_A0A6M3JKW5	Putative Erf family protein	NA
UHGV-1532112_49	eggNOG-mapper	665942.HMPREF1022_00118	ERF superfamily	NA
UHGV-1532112_49	Pfam	PF04404	ERF superfamily	ERF
UHGV-1532112_49	Structural annotation	PF04404	NA	NA
UHGV-1532112_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1532112_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1532112_50	UniRef90	UniRef90_Q1MR30	Single-stranded DNA-binding protein	NA
UHGV-1532112_50	eggNOG-mapper	363253.LI0492	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1532112_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1532112_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1532112_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1532112_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1532112_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1532112_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1532112_51	UniRef90	UniRef90_A0A0J5NRY8	NA	NA
UHGV-1532112_51	eggNOG-mapper	665942.HMPREF1022_00116	PFAM Gp157 family protein	NA
UHGV-1532112_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1532112_51	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1532112_54	PHROG	phrog_11227	protease	other
UHGV-1532112_54	UniRef90	UniRef90_A0A522W6R8	Membrane protease subunit	NA
UHGV-1532112_54	eggNOG-mapper	1327941.T1SAM6_9CAUD	NA	NA
UHGV-1532112_59	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-1532112_60	eggNOG-mapper	1408428.JNJP01000012_gene1089	NA	NA
UHGV-1532112_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1532112_61	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1532112_61	UniRef90	UniRef90_G1UND3	Bro-N domain-containing protein	NA
UHGV-1532112_61	eggNOG-mapper	665942.HMPREF1022_00106	Phage antirepressor protein KilAC domain	NA
UHGV-1532112_61	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1532112_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1532112_61	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1532112_61	COG	COG3617	Prophage antirepressor	NA
UHGV-1532112_63	KOfam	K14059	int; integrase	NA
UHGV-1532112_63	PHROG	phrog_1	integrase	integration and excision
UHGV-1532112_63	UniRef90	UniRef90_UPI001D0A28F9	tyrosine-type recombinase/integrase	NA
UHGV-1532112_63	eggNOG-mapper	596152.DesU5LDRAFT_3031	Belongs to the 'phage' integrase family	NA
UHGV-1532112_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1532112_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1532112_63	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA