UHGV-1532349

Genome information

Genome length 39,401 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-1532349
vOTU ID	vOTU-013812
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0304344
BioSample	SAMEA2738069
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.18
Jumbo phage	No

Genome content
Genome length	39,401 bps
GC content	41.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.43%
Average CDS length	713.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532349_1	PHROG	phrog_18860	NA	unknown function
UHGV-1532349_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1532349_2	PHROG	phrog_291	endolysin	lysis
UHGV-1532349_2	UniRef90	UniRef90_UPI001D073E26	glycosyl hydrolase family 25	NA
UHGV-1532349_2	eggNOG-mapper	1273103.NM10_03031	Glycosyl hydrolases family 25	NA
UHGV-1532349_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1532349_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1532349_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1532349_3	PHROG	phrog_27828	NA	unknown function
UHGV-1532349_3	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-1532349_3	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-1532349_7	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-1532349_7	Structural annotation	PF03906, NF012201, COG4675	NA	NA
UHGV-1532349_8	PHROG	phrog_9880	NA	unknown function
UHGV-1532349_8	UniRef90	UniRef90_A0A239Z8B8	LPD3 domain-containing protein	NA
UHGV-1532349_8	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-1532349_8	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1532349_8	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1532349_9	UniRef90	UniRef90_A0A2S7ZGT8	SLT domain-containing protein	NA
UHGV-1532349_9	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-1532349_9	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1532349_9	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1532349_10	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1532349_10	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-1532349_10	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-1532349_11	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1532349_11	eggNOG-mapper	1220601.L7TJ86_9CAUD	NA	NA
UHGV-1532349_11	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-1532349_12	PHROG	phrog_376	tail protein	tail
UHGV-1532349_12	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-1532349_12	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1532349_13	PHROG	phrog_394	tail protein	tail
UHGV-1532349_13	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-1532349_13	Structural annotation	PF17212	NA	NA
UHGV-1532349_15	Structural annotation	PF21190	NA	NA
UHGV-1532349_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-1532349_16	UniRef90	UniRef90_A0A0B2JTD7	NA	NA
UHGV-1532349_16	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-1532349_16	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1532349_16	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1532349_17	PHROG	phrog_458	protease	other
UHGV-1532349_17	UniRef90	UniRef90_UPI0019E883D9	peptidase	NA
UHGV-1532349_17	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-1532349_18	PHROG	phrog_528	NA	unknown function
UHGV-1532349_18	UniRef90	UniRef90_A0A8E8TUT9	Endopeptidase	NA
UHGV-1532349_18	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1532349_19	PHROG	phrog_21643	NA	unknown function
UHGV-1532349_19	UniRef90	UniRef90_UPI001E3C3D59	portal protein	NA
UHGV-1532349_19	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-1532349_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1532349_20	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1532349_20	UniRef90	UniRef90_A0A239Z979	Bacteriophage head to tail connecting protein	NA
UHGV-1532349_20	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-1532349_20	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1532349_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1532349_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1532349_22	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1532349_22	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-1532349_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1532349_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1532349_22	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1532349_23	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-1532349_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1532349_25	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-1532349_25	Structural annotation	PF07374, TIGR02984	NA	NA
UHGV-1532349_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1532349_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1532349_26	UniRef90	UniRef90_A0A1C6K6Q7	Holliday junction resolvase	NA
UHGV-1532349_26	eggNOG-mapper	93220.LV28_24675	Endodeoxyribonuclease RusA	NA
UHGV-1532349_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1532349_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1532349_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1532349_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1532349_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1532349_27	UniRef90	UniRef90_A0A833C9R6	Single-stranded DNA-binding protein	NA
UHGV-1532349_27	eggNOG-mapper	879309.HMPREF9199_0149	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1532349_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1532349_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1532349_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1532349_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1532349_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1532349_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1532349_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1532349_29	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1532349_29	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1532349_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1532349_31	PHROG	phrog_1689	nucleotide kinase	other
UHGV-1532349_31	UniRef90	UniRef90_A0A143YJD9	HTH cro/C1-type domain-containing protein	NA
UHGV-1532349_31	eggNOG-mapper	883112.HMPREF9707_01487	Helix-turn-helix	NA
UHGV-1532349_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532349_31	Pfam	PF11753	NA	DUF3310
UHGV-1532349_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1532349_32	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1532349_32	UniRef90	UniRef90_A0A2I7RV04	HNH nuclease	NA
UHGV-1532349_32	eggNOG-mapper	552525.B5LPN5_9CAUD	HNH endonuclease	NA
UHGV-1532349_32	Pfam	PF06467	MYM-type Zinc finger with FCS sequence motif	zf-FCS
UHGV-1532349_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1532349_32	Structural annotation	PF13392	NA	NA
UHGV-1532349_33	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1532349_33	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1532349_33	UniRef90	UniRef90_A0A7X7AN00	dUTP diphosphatase (Fragment)	NA
UHGV-1532349_33	eggNOG-mapper	626939.HMPREF9443_01785	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1532349_33	Pfam	PF00692	dUTPase	dUTPase
UHGV-1532349_33	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1532349_36	PHROG	phrog_9804	NA	unknown function
UHGV-1532349_36	Structural annotation	PF11417	NA	NA
UHGV-1532349_37	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1532349_37	UniRef90	UniRef90_UPI0003FCA6D4	DnaD domain protein	NA
UHGV-1532349_37	eggNOG-mapper	218284.CCDN010000001_gene904	Replication initiation and membrane attachment	NA
UHGV-1532349_37	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1532349_37	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1532349_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1532349_37	Structural annotation	PF04492, MF_01911, NF040939, COG3355	NA	NA
UHGV-1532349_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1532349_39	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1532349_40	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1532349_40	UniRef90	UniRef90_UPI001402D75D	ERF family protein	NA
UHGV-1532349_40	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-1532349_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-1532349_40	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1532349_41	PHROG	phrog_674	NA	unknown function
UHGV-1532349_41	UniRef90	UniRef90_UPI000E71DE97	NA	NA
UHGV-1532349_41	Pfam	PF07083	NA	DUF1351
UHGV-1532349_41	Structural annotation	PF07083	NA	NA
UHGV-1532349_43	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-1532349_43	UniRef90	UniRef90_C4FP75	Hep/Hag repeat protein	NA
UHGV-1532349_43	eggNOG-mapper	546273.VEIDISOL_00699	Hep Hag repeat protein	NA
UHGV-1532349_43	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-1532349_43	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-1532349_43	COG	COG5295	Autotransporter adhesin	NA
UHGV-1532349_43	Structural annotation	PF03895, NF040984, COG5295	NA	NA
UHGV-1532349_45	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1532349_47	UniRef90	UniRef90_UPI000D0ECDD8	NA	NA
UHGV-1532349_47	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1532349_47	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-1532349_47	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1532349_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1532349_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532349_48	UniRef90	UniRef90_UPI00195FB8BD	helix-turn-helix domain-containing protein	NA
UHGV-1532349_48	eggNOG-mapper	1111454.HMPREF1250_1030	Helix-turn-helix domain protein	NA
UHGV-1532349_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532349_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1532349_48	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-1532349_49	PHROG	phrog_20936	NA	unknown function
UHGV-1532349_49	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1532349_49	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-1532349_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1532349_49	Structural annotation	PF06114	NA	NA
UHGV-1532349_51	KOfam	K14059	int; integrase	NA
UHGV-1532349_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1532349_51	UniRef90	UniRef90_UPI001EF5E62B	site-specific integrase	NA
UHGV-1532349_51	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-1532349_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1532349_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1532349_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1532349_52	eggNOG-mapper	1401067.HMPREF0872_09000	NA	NA