UHGV-1532517

Genome information

Genome length 50,732 bps

CDS count 61

Completeness 68.75% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1532517
vOTU ID	vOTU-015329
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0337052
BioSample	SAMEA4545366
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.42
Jumbo phage	No

Genome content
Genome length	50,732 bps
GC content	61.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.20%
Average CDS length	760.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532517_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1532517_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1532517_5	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1532517_5	UniRef90	UniRef90_A0A533RZP2	NA	NA
UHGV-1532517_5	eggNOG-mapper	591001.Acfer_1134	NA	NA
UHGV-1532517_5	Pfam	PF10926	NA	DUF2800
UHGV-1532517_5	COG	COG2887	RecB family exonuclease	NA
UHGV-1532517_5	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1532517_6	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1532517_6	UniRef90	UniRef90_UPI001C1238FC	NA	NA
UHGV-1532517_6	eggNOG-mapper	1329516.JPST01000014_gene646	NA	NA
UHGV-1532517_6	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1532517_6	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1532517_7	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1532517_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1532517_7	UniRef90	UniRef90_A4J3S2	DNA-directed DNA polymerase	NA
UHGV-1532517_7	eggNOG-mapper	349161.Dred_1191	DNA polymerase	NA
UHGV-1532517_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1532517_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1532517_7	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1532517_9	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1532517_9	PHROG	phrog_30550	NA	unknown function
UHGV-1532517_9	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-1532517_9	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1532517_9	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1532517_9	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1532517_11	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1532517_11	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1532517_11	UniRef90	UniRef90_A0A3G9J1T4	DEAD/DEAH box helicase	NA
UHGV-1532517_11	eggNOG-mapper	1296660.S5MA26_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-1532517_11	PADLOC	DpdE_00012	DpdE	DPD
UHGV-1532517_11	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1532517_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1532517_11	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1532517_12	PHROG	phrog_24386	NA	unknown function
UHGV-1532517_12	eggNOG-mapper	1280679.ATVX01000028_gene1837	UMP catabolic process	NA
UHGV-1532517_12	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-1532517_12	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-1532517_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1532517_13	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1532517_14	PHROG	phrog_474	phosphofructokinase	other
UHGV-1532517_14	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-1532517_14	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-1532517_14	Pfam	PF19905	NA	DUF6378
UHGV-1532517_15	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-1532517_15	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-1532517_15	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1532517_15	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1532517_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1532517_23	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1532517_23	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-1532517_23	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1532517_25	PHROG	phrog_924	NA	unknown function
UHGV-1532517_25	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-1532517_25	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-1532517_25	Pfam	PF04448	NA	DUF551
UHGV-1532517_25	Structural annotation	NF041588	NA	NA
UHGV-1532517_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1532517_30	UniRef90	UniRef90_UPI00189D451C	virulence-associated E family protein	NA
UHGV-1532517_30	eggNOG-mapper	1134413.ANNK01000054_gene2222	Virulence-associated protein E	NA
UHGV-1532517_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1532517_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1532517_30	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1532517_31	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1532517_31	UniRef90	UniRef90_A0A1Y4MPX2	VRR-NUC domain-containing protein	NA
UHGV-1532517_31	eggNOG-mapper	697281.Mahau_2836	VRR_NUC	NA
UHGV-1532517_31	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1532517_35	UniRef90	UniRef90_A0A662S5F4	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-1532517_35	eggNOG-mapper	1306174.JODP01000006_gene2948	NA	NA
UHGV-1532517_35	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-1532517_37	PHROG	phrog_16683	NA	unknown function
UHGV-1532517_37	UniRef90	UniRef90_A0A3C0QQ13	Zinc-binding protein	NA
UHGV-1532517_37	eggNOG-mapper	246199.CUS_4789	NA	NA
UHGV-1532517_37	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-1532517_37	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-1532517_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1532517_39	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-1532517_39	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-1532517_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1532517_39	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1532517_39	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1532517_39	COG	COG5362	Phage terminase large subunit	NA
UHGV-1532517_39	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1532517_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-1532517_41	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-1532517_41	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1532517_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-1532517_43	UniRef90	UniRef90_A0A5D4RB37	N4-gp56 family major capsid protein	NA
UHGV-1532517_43	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-1532517_43	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1532517_44	PHROG	phrog_13046	NA	unknown function
UHGV-1532517_44	Structural annotation	PF20387	NA	NA
UHGV-1532517_45	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1532517_45	eggNOG-mapper	1408437.JNJN01000001_gene1713	NA	NA
UHGV-1532517_45	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1532517_46	PHROG	phrog_28766	tail fiber protein	tail
UHGV-1532517_47	Structural annotation	PF10651, NF038186	NA	NA
UHGV-1532517_49	PHROG	phrog_38190	NA	unknown function
UHGV-1532517_49	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-1532517_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1532517_51	Structural annotation	PF00629, NF033675	NA	NA
UHGV-1532517_52	PHROG	phrog_31538	NA	unknown function
UHGV-1532517_53	PHROG	phrog_13589	NA	unknown function
UHGV-1532517_53	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1532517_54	UniRef90	UniRef90_A0A7X4ZPD3	Histidine kinase	NA
UHGV-1532517_54	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1532517_56	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-1532517_56	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-1532517_56	Structural annotation	PF18998, PF20328	NA	NA
UHGV-1532517_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1532517_57	PHROG	phrog_5182	endolysin	lysis
UHGV-1532517_57	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-1532517_57	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1532517_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1532517_57	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1532517_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1532517_57	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1532517_58	PHROG	phrog_10091	holin	lysis
UHGV-1532517_58	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-1532517_58	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-1532517_58	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1532517_58	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1532517_58	COG	COG5546	NA	NA
UHGV-1532517_58	Structural annotation	COG5546	NA	NA
UHGV-1532517_61	eggNOG-mapper	693746.OBV_23800	NA	NA
UHGV-1532517_61	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-1532517_61	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C