UHGV-1533088

Genome information

Genome length 32,869 bps

CDS count 47

Completeness 86.38% (medium-quality)

geNomad score 0.9478

Prediction confidence Confident

Genome information
Genome ID	UHGV-1533088
vOTU ID	vOTU-018417
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0268094
BioSample	SAMEA2737831
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9478
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.19
Jumbo phage	No

Genome content
Genome length	32,869 bps
GC content	57.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.70%
Average CDS length	651.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1533088_1	UniRef90	UniRef90_A0A3C0RVS0	Transglutaminase (Fragment)	NA
UHGV-1533088_1	eggNOG-mapper	573370.DMR_26740	Transglutaminase/protease-like homologues	NA
UHGV-1533088_1	COG	COG1305	Transglutaminase-like enzyme, putative cysteine protease	NA
UHGV-1533088_2	KOfam	K14059	int; integrase	NA
UHGV-1533088_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1533088_2	UniRef90	UniRef90_UPI000496F64A	tyrosine-type recombinase/integrase	NA
UHGV-1533088_2	eggNOG-mapper	573370.DMR_01160	Belongs to the 'phage' integrase family	NA
UHGV-1533088_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1533088_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1533088_2	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1533088_6	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-1533088_6	UniRef90	UniRef90_A0A3P1ZV66	Recombination-associated protein RdgC	NA
UHGV-1533088_6	eggNOG-mapper	457398.HMPREF0326_01443	Putative exonuclease, RdgC	NA
UHGV-1533088_6	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-1533088_6	Structural annotation	PF04381, MF_00194, NF001465, COG2974	NA	NA
UHGV-1533088_9	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1533088_9	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-1533088_9	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-1533088_10	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1533088_10	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1533088_10	UniRef90	UniRef90_A0A807ZPP9	Nuclease	NA
UHGV-1533088_10	eggNOG-mapper	411464.DESPIG_01319	PD-(D/E)XK nuclease superfamily	NA
UHGV-1533088_10	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1533088_10	COG	COG2887	RecB family exonuclease	NA
UHGV-1533088_10	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1533088_12	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-1533088_12	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-1533088_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1533088_13	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-1533088_13	UniRef90	UniRef90_A0A3A4WJE2	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1533088_13	eggNOG-mapper	59196.RICGR_0448	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1533088_13	Pfam	PF05534	HicB family	HicB
UHGV-1533088_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1533088_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1533088_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1533088_14	UniRef90	UniRef90_A0A4Q0MVQ8	Peptidase_S24 domain-containing protein	NA
UHGV-1533088_14	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-1533088_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1533088_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1533088_14	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1533088_16	PHROG	phrog_16304	NA	unknown function
UHGV-1533088_16	eggNOG-mapper	1408428.JNJP01000025_gene276	NA	NA
UHGV-1533088_16	Pfam	PF19808	NA	DUF6291
UHGV-1533088_16	Structural annotation	PF19808	NA	NA
UHGV-1533088_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1533088_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1533088_17	UniRef90	UniRef90_A0A059WFK9	IstB-like ATP binding protein	NA
UHGV-1533088_17	eggNOG-mapper	1476902.A0A067ZJ24_9CAUD	IstB-like ATP binding protein	NA
UHGV-1533088_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1533088_17	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-1533088_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1533088_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1533088_18	UniRef90	UniRef90_A0A8I0B5G2	Single-stranded DNA-binding protein	NA
UHGV-1533088_18	eggNOG-mapper	525897.Dbac_0325	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1533088_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1533088_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1533088_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1533088_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1533088_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1533088_19	PHROG	phrog_824	NA	unknown function
UHGV-1533088_19	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-1533088_19	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-1533088_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1533088_21	Structural annotation	TIGR03188, COG0140	NA	NA
UHGV-1533088_22	UniRef90	UniRef90_UPI000930F274	nrdD protein	NA
UHGV-1533088_22	eggNOG-mapper	665956.HMPREF1032_01737	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1533088_22	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1533088_22	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1533088_23	eggNOG-mapper	525146.Ddes_0259	NA	NA
UHGV-1533088_23	Structural annotation	PF00544, COG3866	NA	NA
UHGV-1533088_26	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1533088_26	PHROG	phrog_7	endolysin	lysis
UHGV-1533088_26	UniRef90	UniRef90_A0A060BRG6	Lysozyme (Fragment)	NA
UHGV-1533088_26	eggNOG-mapper	1218075.BAYA01000007_gene2667	Phage lysozyme	NA
UHGV-1533088_26	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1533088_26	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1533088_26	HAMAP	MF_04110	Endolysin	NA
UHGV-1533088_26	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-1533088_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1533088_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1533088_29	UniRef90	UniRef90_UPI001786FDCF	terminase small subunit	NA
UHGV-1533088_29	eggNOG-mapper	1316932.MHH_c01510	Terminase small subunit	NA
UHGV-1533088_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1533088_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1533088_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1533088_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1533088_30	PHROG	phrog_2472	NA	unknown function
UHGV-1533088_30	UniRef90	UniRef90_UPI00194E96F0	terminase family protein	NA
UHGV-1533088_30	eggNOG-mapper	641491.DND132_2087	Terminase RNaseH-like domain	NA
UHGV-1533088_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1533088_30	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1533088_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1533088_31	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1533088_31	UniRef90	UniRef90_A0A516LL11	Putative portal protein	NA
UHGV-1533088_31	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-1533088_31	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1533088_31	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1533088_33	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-1533088_34	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1533088_34	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-1533088_34	eggNOG-mapper	1401065.HMPREF2130_10960	NA	NA
UHGV-1533088_34	Pfam	PF17236	NA	DUF5309
UHGV-1533088_34	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-1533088_35	PHROG	phrog_3982	NA	unknown function
UHGV-1533088_36	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-1533088_36	eggNOG-mapper	716928.AJQT01000006_gene2767	NA	NA
UHGV-1533088_36	Structural annotation	PF20387	NA	NA
UHGV-1533088_37	PHROG	phrog_240	head protein	head and packaging
UHGV-1533088_37	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-1533088_37	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-1533088_39	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1533088_39	UniRef90	UniRef90_A0A7S5Y917	Stabilization protein	NA
UHGV-1533088_39	eggNOG-mapper	264203.ZMO0390	NA	NA
UHGV-1533088_39	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1533088_40	eggNOG-mapper	1054968.G0X4V0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1533088_40	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1533088_43	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-1533088_44	PHROG	phrog_4287	DNA ejection protein	DNA, RNA and nucleotide metabolism
UHGV-1533088_44	UniRef90	UniRef90_A0A6A7M4K4	Peptidase S74 domain-containing protein	NA
UHGV-1533088_45	PHROG	phrog_13634	NA	unknown function
UHGV-1533088_45	eggNOG-mapper	1429851.X548_16610	lytic transglycosylase activity	NA
UHGV-1533088_45	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1533088_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA