UHGV-1533131

Genome information

Genome length 40,317 bps

CDS count 65

Completeness 94.78% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1533131
vOTU ID	vOTU-070438
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0296462
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.93
Jumbo phage	No

Genome content
Genome length	40,317 bps
GC content	41.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.10%
Average CDS length	563.95 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1533131_1	PHROG	phrog_14030	NA	unknown function
UHGV-1533131_1	UniRef90	UniRef90_UPI001D07F964	C40 family peptidase	NA
UHGV-1533131_1	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-1533131_1	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1533131_1	Structural annotation	PF05382, PF19087, NF033741, COG0791	NA	NA
UHGV-1533131_2	PHROG	phrog_1129	holin	lysis
UHGV-1533131_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-1533131_2	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1533131_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1533131_2	Structural annotation	PF16079	NA	NA
UHGV-1533131_3	PHROG	phrog_4105	NA	unknown function
UHGV-1533131_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1533131_5	UniRef90	UniRef90_A0A3R6V2Q9	CopG family transcriptional regulator	NA
UHGV-1533131_5	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1533131_5	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1533131_6	PHROG	phrog_11541	NA	unknown function
UHGV-1533131_6	UniRef90	UniRef90_A0A415YBY8	SGNH/GDSL hydrolase family protein	NA
UHGV-1533131_6	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-1533131_6	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1533131_7	PHROG	phrog_16164	NA	unknown function
UHGV-1533131_8	KOfam	K06871	NA	NA
UHGV-1533131_8	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-1533131_8	UniRef90	UniRef90_A0A416J099	Radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-1533131_8	eggNOG-mapper	457412.RSAG_01114	4Fe-4S single cluster domain	NA
UHGV-1533131_8	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1533131_8	NCBIFam	TIGR04115.1	radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-1533131_8	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-1533131_8	Structural annotation	PF00962, MF_00660, TIGR04115, COG0641	NA	NA
UHGV-1533131_9	Structural annotation	TIGR04116	NA	NA
UHGV-1533131_13	Structural annotation	PF04862, TIGR04362	NA	NA
UHGV-1533131_14	PHROG	phrog_521	tail protein	tail
UHGV-1533131_14	UniRef90	UniRef90_A0A416J1E2	NA	NA
UHGV-1533131_14	eggNOG-mapper	397288.C806_00058	NA	NA
UHGV-1533131_14	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1533131_14	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1533131_14	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1533131_15	PHROG	phrog_1608	tail protein	tail
UHGV-1533131_15	UniRef90	UniRef90_A0A416J0H0	Phage tail protein	NA
UHGV-1533131_15	eggNOG-mapper	397288.C806_00059	Baseplate J-like protein	NA
UHGV-1533131_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1533131_15	COG	COG3299	NA	NA
UHGV-1533131_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1533131_16	PHROG	phrog_120	baseplate protein	tail
UHGV-1533131_16	UniRef90	UniRef90_A0A416J1A4	NA	NA
UHGV-1533131_16	eggNOG-mapper	1408324.JNJK01000006_gene1395	NA	NA
UHGV-1533131_16	Pfam	PF10934	NA	DUF2634
UHGV-1533131_16	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1533131_16	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1533131_17	UniRef90	UniRef90_A0A416J0J8	NA	NA
UHGV-1533131_17	Structural annotation	PF10844, TIGR00523, COG0361	NA	NA
UHGV-1533131_18	PHROG	phrog_400	tail protein	tail
UHGV-1533131_18	UniRef90	UniRef90_A0A416J0B1	CHAP domain-containing protein	NA
UHGV-1533131_18	eggNOG-mapper	1408324.JNJK01000006_gene1393	NLP P60 protein	NA
UHGV-1533131_18	Pfam	PF05257	CHAP domain	CHAP
UHGV-1533131_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1533131_18	Structural annotation	PF14594, PF01551, NF033848, NF040883, COG4379	NA	NA
UHGV-1533131_19	PHROG	phrog_380	endolysin	lysis
UHGV-1533131_19	UniRef90	UniRef90_UPI001D07E242	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1533131_19	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-1533131_19	Pfam	PF01476	LysM domain	LysM
UHGV-1533131_19	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1533131_19	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1533131_20	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1533131_20	UniRef90	UniRef90_A0A416J093	PhageMin_Tail domain-containing protein	NA
UHGV-1533131_20	eggNOG-mapper	398512.JQKC01000009_gene461	tail tape measure protein, TP901	NA
UHGV-1533131_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1533131_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1533131_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1533131_21	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1533131_21	UniRef90	UniRef90_A0A3N1XNY1	XkdN-like tail assembly chaperone	NA
UHGV-1533131_21	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1533131_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1533131_21	Structural annotation	PF08890	NA	NA
UHGV-1533131_22	PHROG	phrog_365	tail protein	tail
UHGV-1533131_22	UniRef90	UniRef90_A0A416BN92	Phage portal protein	NA
UHGV-1533131_22	eggNOG-mapper	1408324.JNJK01000006_gene1388	Phage tail tube protein	NA
UHGV-1533131_22	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1533131_23	PHROG	phrog_1480	tail sheath	tail
UHGV-1533131_23	UniRef90	UniRef90_UPI001D07B2CE	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1533131_23	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-1533131_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1533131_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1533131_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1533131_24	PHROG	phrog_525	NA	unknown function
UHGV-1533131_24	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-1533131_24	Pfam	PF20765	NA	DUF6838
UHGV-1533131_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1533131_25	UniRef90	UniRef90_UPI001D0810E1	HK97 gp10 family phage protein	NA
UHGV-1533131_25	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1533131_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1533131_26	PHROG	phrog_25	head closure Hc1	connector
UHGV-1533131_26	UniRef90	UniRef90_UPI0016515D2B	phage head closure protein	NA
UHGV-1533131_26	eggNOG-mapper	649747.HMPREF0083_01007	Phage head-tail adaptor	NA
UHGV-1533131_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1533131_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1533131_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1533131_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1533131_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1533131_27	UniRef90	UniRef90_A0A416J1B1	Phage gp6-like head-tail connector protein	NA
UHGV-1533131_27	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-1533131_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1533131_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1533131_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1533131_28	Structural annotation	PF01281	NA	NA
UHGV-1533131_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1533131_29	UniRef90	UniRef90_A0A416J0C2	Phage major capsid protein	NA
UHGV-1533131_29	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-1533131_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1533131_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1533131_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1533131_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1533131_30	KOfam	K06904	NA	NA
UHGV-1533131_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1533131_30	UniRef90	UniRef90_A0A416J0A2	HK97 family phage prohead protease	NA
UHGV-1533131_30	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-1533131_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1533131_30	COG	COG3740	Phage head maturation protease	NA
UHGV-1533131_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1533131_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1533131_31	UniRef90	UniRef90_A0A4S2AGC7	Phage portal protein	NA
UHGV-1533131_31	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-1533131_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1533131_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1533131_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1533131_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1533131_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1533131_32	UniRef90	UniRef90_A0A416J174	Terminase	NA
UHGV-1533131_32	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-1533131_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1533131_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1533131_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1533131_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1533131_33	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-1533131_33	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-1533131_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1533131_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1533131_34	UniRef90	UniRef90_A0A416J1G2	HNH domain-containing protein	NA
UHGV-1533131_34	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-1533131_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1533131_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1533131_35	UniRef90	UniRef90_UPI000E44A7EA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1533131_35	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-1533131_35	Structural annotation	PF02996	NA	NA
UHGV-1533131_36	Structural annotation	PF06257, COG4466	NA	NA
UHGV-1533131_40	PHROG	phrog_6072	NA	unknown function
UHGV-1533131_41	PHROG	phrog_7566	NA	unknown function
UHGV-1533131_41	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1533131_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1533131_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1533131_44	UniRef90	UniRef90_A0A417PG59	Single-stranded DNA-binding protein	NA
UHGV-1533131_44	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1533131_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1533131_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1533131_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1533131_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1533131_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1533131_46	PHROG	phrog_3502	NA	unknown function
UHGV-1533131_46	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-1533131_46	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1533131_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1533131_46	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-1533131_50	PHROG	phrog_17690	NA	unknown function
UHGV-1533131_50	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1533131_50	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1533131_51	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1533131_51	PHROG	phrog_15077	NA	unknown function
UHGV-1533131_51	UniRef90	UniRef90_UPI001D098147	ParB N-terminal domain-containing protein	NA
UHGV-1533131_51	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-1533131_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1533131_51	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1533131_52	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1533131_52	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1533131_52	UniRef90	UniRef90_A0A417A9Q9	ParA family protein	NA
UHGV-1533131_52	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-1533131_52	Pfam	PF13614	AAA domain	AAA_31
UHGV-1533131_52	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1533131_52	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1533131_53	eggNOG-mapper	1298920.KI911353_gene4860	NA	NA
UHGV-1533131_54	UniRef90	UniRef90_A0A564VJZ8	Ribonuclease H	NA
UHGV-1533131_54	eggNOG-mapper	160492.XF_2158	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1533131_54	COG	COG0328	Ribonuclease HI	NA
UHGV-1533131_54	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1533131_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1533131_55	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-1533131_55	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-1533131_55	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1533131_59	eggNOG-mapper	1121115.AXVN01000006_gene2172	NA	NA
UHGV-1533131_62	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1533131_62	UniRef90	UniRef90_UPI00156EDECA	NA	NA
UHGV-1533131_62	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-1533131_62	Structural annotation	PF06573	NA	NA
UHGV-1533131_64	UniRef90	UniRef90_UPI001D072BB4	helix-turn-helix domain-containing protein	NA
UHGV-1533131_64	eggNOG-mapper	743719.PaelaDRAFT_5623	Helix-turn-helix XRE-family like proteins	NA
UHGV-1533131_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1533131_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1533131_65	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1533131_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1533131_65	UniRef90	UniRef90_UPI001D0969DE	helix-turn-helix domain-containing protein	NA
UHGV-1533131_65	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-1533131_65	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1533131_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1533131_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1533131_65	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA