UHGV-1533496

Genome information

Genome length 34,912 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1533496
vOTU ID	vOTU-074967
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0272885
BioSample	SAMEA2738127
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.14
Jumbo phage	No

Genome content
Genome length	34,912 bps
GC content	40.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.60%
Average CDS length	618.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1533496_1	PHROG	phrog_918	NA	unknown function
UHGV-1533496_1	UniRef90	UniRef90_UPI001C1095C9	NA	NA
UHGV-1533496_1	eggNOG-mapper	1260356.D920_00086	NA	NA
UHGV-1533496_1	Pfam	PF19791	NA	DUF6275
UHGV-1533496_1	Structural annotation	PF19791	NA	NA
UHGV-1533496_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1533496_2	PHROG	phrog_4018	amidase	lysis
UHGV-1533496_2	UniRef90	UniRef90_H1PJB2	Peptidase C51 domain-containing protein	NA
UHGV-1533496_2	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-1533496_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1533496_2	Pfam	PF04122	ell wall binding domain 2 (CWB2)	CW_binding_2
UHGV-1533496_2	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1533496_3	PHROG	phrog_1129	holin	lysis
UHGV-1533496_3	UniRef90	UniRef90_A0A6N9QEW3	Holin	NA
UHGV-1533496_3	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1533496_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1533496_3	Structural annotation	PF06946	NA	NA
UHGV-1533496_4	PHROG	phrog_937	hemolysin	other
UHGV-1533496_5	eggNOG-mapper	1196031.ALEG01000039_gene1303	Phage minor structural protein	NA
UHGV-1533496_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1533496_6	PHROG	phrog_19695	NA	unknown function
UHGV-1533496_6	Structural annotation	PF10651, COG3330	NA	NA
UHGV-1533496_7	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-1533496_7	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1533496_7	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1533496_9	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1533496_9	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-1533496_9	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1533496_11	PHROG	phrog_267	major head protein	head and packaging
UHGV-1533496_11	UniRef90	UniRef90_A0A846ZZX1	P22 coat protein - protein 5 domain protein	NA
UHGV-1533496_11	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-1533496_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1533496_13	PHROG	phrog_156	portal protein	head and packaging
UHGV-1533496_13	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-1533496_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1533496_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1533496_15	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-1533496_15	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-1533496_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1533496_15	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1533496_15	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1533496_15	COG	COG5362	Phage terminase large subunit	NA
UHGV-1533496_15	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1533496_20	UniRef90	UniRef90_A0A1I6IEC4	Helix-turn-helix	NA
UHGV-1533496_20	eggNOG-mapper	888727.HMPREF9092_1413	Helix-turn-helix	NA
UHGV-1533496_20	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1533496_20	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1533496_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1533496_24	UniRef90	UniRef90_A0A1Y4GXE1	MazG domain-containing protein	NA
UHGV-1533496_24	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-1533496_24	Structural annotation	PF02185	NA	NA
UHGV-1533496_25	PHROG	phrog_5781	NA	unknown function
UHGV-1533496_25	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-1533496_25	Pfam	PF14359	NA	DUF4406
UHGV-1533496_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1533496_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1533496_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1533496_29	UniRef90	UniRef90_A0A1C6E221	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1533496_29	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1533496_29	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1533496_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1533496_29	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1533496_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1533496_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1533496_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1533496_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1533496_34	UniRef90	UniRef90_X8K236	Single-stranded DNA-binding protein	NA
UHGV-1533496_34	eggNOG-mapper	883109.HMPREF0380_00268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1533496_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1533496_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1533496_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1533496_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1533496_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1533496_35	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1533496_35	UniRef90	UniRef90_UPI000C7A2C17	NA	NA
UHGV-1533496_35	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-1533496_35	Pfam	PF06356	NA	DUF1064
UHGV-1533496_35	Structural annotation	PF06356	NA	NA
UHGV-1533496_36	PHROG	phrog_9804	NA	unknown function
UHGV-1533496_36	UniRef90	UniRef90_A0A845QMW0	Inhibitor_G39P domain-containing protein	NA
UHGV-1533496_36	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-1533496_36	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1533496_36	Structural annotation	PF11417	NA	NA
UHGV-1533496_37	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1533496_37	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-1533496_37	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-1533496_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1533496_37	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-1533496_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1533496_38	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1533496_38	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1533496_38	Structural annotation	PF05772	NA	NA
UHGV-1533496_39	PHROG	phrog_7566	NA	unknown function
UHGV-1533496_39	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-1533496_40	PHROG	phrog_14970	NA	unknown function
UHGV-1533496_40	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-1533496_40	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-1533496_40	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1533496_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1533496_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1533496_42	PHROG	phrog_674	NA	unknown function
UHGV-1533496_42	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-1533496_42	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-1533496_42	Pfam	PF07083	NA	DUF1351
UHGV-1533496_42	Structural annotation	PF07083	NA	NA
UHGV-1533496_43	Structural annotation	PF02295, MF_01804, TIGR00122, COG1654	NA	NA
UHGV-1533496_44	PHROG	phrog_14105	NA	unknown function
UHGV-1533496_44	UniRef90	UniRef90_A0A1C5VVX1	PPE-repeat proteins	NA
UHGV-1533496_44	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-1533496_44	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-1533496_44	COG	COG5651	PPE-repeat protein	NA
UHGV-1533496_45	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1533496_45	PHROG	phrog_32437	NA	unknown function
UHGV-1533496_45	UniRef90	UniRef90_A0A316Q6B7	SLT domain-containing protein	NA
UHGV-1533496_45	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-1533496_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1533496_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1533496_45	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1533496_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1533496_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1533496_47	UniRef90	UniRef90_J5UKV5	DNA-binding helix-turn-helix protein	NA
UHGV-1533496_47	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-1533496_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1533496_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1533496_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1533496_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1533496_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1533496_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1533496_48	UniRef90	UniRef90_R6QF53	Putative repressor LexA	NA
UHGV-1533496_48	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1533496_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1533496_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1533496_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1533496_48	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1533496_49	Pfam	PF13619	KTSC domain	KTSC
UHGV-1533496_50	KOfam	K14059	int; integrase	NA
UHGV-1533496_50	PHROG	phrog_1	integrase	integration and excision
UHGV-1533496_50	UniRef90	UniRef90_A0A095ZM98	Tyr recombinase domain-containing protein	NA
UHGV-1533496_50	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1533496_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1533496_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1533496_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1533496_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1533496_51	UniRef90	UniRef90_J4J1C1	Transposon-encoded protein TnpW	NA
UHGV-1533496_51	eggNOG-mapper	1282664.H354_00190	Transposon-encoded protein TnpW	NA
UHGV-1533496_51	Pfam	PF14202	Transposon-encoded protein TnpW	TnpW
UHGV-1533496_52	eggNOG-mapper	1095738.HMPREF1047_1005	NA	NA
UHGV-1533496_52	COG	COG2207	AraC-type DNA-binding domain and AraC-containing proteins	NA