UHGV-1533553

Genome information

Genome length 21,490 bps

CDS count 25

Completeness 53.37% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1533553
vOTU ID	vOTU-036491
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0164455
BioSample	SAMEA3449346
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.06
Jumbo phage	No

Genome content
Genome length	21,490 bps
GC content	40.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	90.19%
Average CDS length	779.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1533553_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1533553_1	UniRef90	UniRef90_UPI00189AC00E	terminase large subunit	NA
UHGV-1533553_1	eggNOG-mapper	1154860.SAG0136_08065	Terminase	NA
UHGV-1533553_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1533553_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1533553_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1533553_1	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1533553_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1533553_3	UniRef90	UniRef90_UPI00189920CB	phage portal protein	NA
UHGV-1533553_3	eggNOG-mapper	1403946.Q615_SPAC00127G0138	Phage portal protein	NA
UHGV-1533553_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1533553_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1533553_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1533553_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1533553_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1533553_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1533553_4	UniRef90	UniRef90_A0A428GXI4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1533553_4	eggNOG-mapper	1123309.AQYB01000019_gene894	Belongs to the peptidase S14 family	NA
UHGV-1533553_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1533553_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1533553_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1533553_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1533553_5	UniRef90	UniRef90_UPI001BDA9019	phage major capsid protein	NA
UHGV-1533553_5	eggNOG-mapper	764299.STRIC_0102	capsid protein	NA
UHGV-1533553_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1533553_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1533553_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1533553_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1533553_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1533553_6	UniRef90	UniRef90_UPI00189BB7BE	head-tail connector protein	NA
UHGV-1533553_6	eggNOG-mapper	1225805.J7KDJ3_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1533553_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1533553_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1533553_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1533553_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-1533553_7	UniRef90	UniRef90_UPI001BD9C68B	head-tail adaptor protein	NA
UHGV-1533553_7	eggNOG-mapper	1154860.SAG0136_08105	Phage head-tail joining protein	NA
UHGV-1533553_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1533553_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1533553_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1533553_8	UniRef90	UniRef90_UPI00066114D3	HK97 gp10 family phage protein	NA
UHGV-1533553_8	eggNOG-mapper	1154860.SAG0136_08110	NA	NA
UHGV-1533553_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1533553_8	Structural annotation	TIGR01725	NA	NA
UHGV-1533553_9	PHROG	phrog_78	tail terminator	connector
UHGV-1533553_9	UniRef90	UniRef90_W1TYT9	NA	NA
UHGV-1533553_9	eggNOG-mapper	1123309.AQYB01000019_gene899	NA	NA
UHGV-1533553_9	Structural annotation	PF05657	NA	NA
UHGV-1533553_10	PHROG	phrog_88	major tail protein	tail
UHGV-1533553_10	UniRef90	UniRef90_UPI001BDB41CF	phage tail protein	NA
UHGV-1533553_10	eggNOG-mapper	764299.STRIC_0108	Phage tail tube protein	NA
UHGV-1533553_10	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1533553_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1533553_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1533553_11	PHROG	phrog_187	head-tail adaptor	connector
UHGV-1533553_11	UniRef90	UniRef90_A0A116MET7	NA	NA
UHGV-1533553_11	Structural annotation	PF06896	NA	NA
UHGV-1533553_12	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-1533553_12	UniRef90	UniRef90_UPI00158A2AF4	phage tail tape measure protein	NA
UHGV-1533553_12	eggNOG-mapper	1123309.AQYB01000019_gene903	Phage-related minor tail protein	NA
UHGV-1533553_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1533553_13	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1533553_13	UniRef90	UniRef90_UPI0018AC34A7	HNH endonuclease	NA
UHGV-1533553_13	eggNOG-mapper	1158610.UC3_02343	regulation of methylation-dependent chromatin silencing	NA
UHGV-1533553_13	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1533553_13	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-1533553_13	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-1533553_13	Structural annotation	PF05766	NA	NA
UHGV-1533553_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1533553_14	UniRef90	UniRef90_UPI001BD9F57F	phage tail tape measure protein	NA
UHGV-1533553_14	eggNOG-mapper	1314.HKU360_01215	Phage-related minor tail protein	NA
UHGV-1533553_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1533553_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1533553_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1533553_15	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-1533553_15	UniRef90	UniRef90_A0A1F1A2Q2	PhageMin_Tail domain-containing protein	NA
UHGV-1533553_15	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-1533553_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1533553_15	COG	COG5283	Phage-related tail protein	NA
UHGV-1533553_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1533553_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1533553_16	UniRef90	UniRef90_UPI0018982A9B	phage tail family protein	NA
UHGV-1533553_16	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-1533553_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1533553_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1533553_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1533553_17	PHROG	phrog_2270	NA	unknown function
UHGV-1533553_17	UniRef90	UniRef90_UPI0018978324	gp58-like family protein	NA
UHGV-1533553_17	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-1533553_17	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1533553_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1533553_17	Structural annotation	PF14594, PF07902, TIGR01665, COG4926	NA	NA
UHGV-1533553_19	PHROG	phrog_1554	NA	unknown function
UHGV-1533553_19	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-1533553_19	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-1533553_19	Structural annotation	PF07104	NA	NA
UHGV-1533553_20	PHROG	phrog_199	holin	lysis
UHGV-1533553_20	UniRef90	UniRef90_A0A4D6ABU6	Holin	NA
UHGV-1533553_20	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1533553_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1533553_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1533553_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1533553_21	PHROG	phrog_608	holin	lysis
UHGV-1533553_21	UniRef90	UniRef90_I2NHW5	Phage holin, LL-H family	NA
UHGV-1533553_21	eggNOG-mapper	585203.SMSK564_1272	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1533553_21	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1533553_21	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1533553_22	PHROG	phrog_998	endolysin	lysis
UHGV-1533553_22	UniRef90	UniRef90_A0A359YH70	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1533553_22	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1533553_22	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1533553_22	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-1533553_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1533553_22	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-1533553_23	UniRef90	UniRef90_Q38012	Orfa protein	NA
UHGV-1533553_24	PHROG	phrog_1529	NA	unknown function
UHGV-1533553_24	UniRef90	UniRef90_UPI001E59F9AF	XRE family transcriptional regulator	NA
UHGV-1533553_24	eggNOG-mapper	1234593.ANBY01000020_gene1310	NA	NA
UHGV-1533553_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1533553_24	Structural annotation	PF13443, TIGR02607, COG3655	NA	NA
UHGV-1533553_25	PHROG	phrog_1529	NA	unknown function
UHGV-1533553_25	UniRef90	UniRef90_UPI001960B4B3	DNA-binding protein	NA
UHGV-1533553_25	eggNOG-mapper	999425.HMPREF9186_01940	NA	NA
UHGV-1533553_25	Structural annotation	PF01381, NF040507, COG3655	NA	NA