UHGV-1534109

Genome information

Genome length 41,524 bps

CDS count 80

Completeness 66.79% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1534109
vOTU ID	vOTU-021335
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0295956
BioSample	SAMEA2579952
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.01
Jumbo phage	No

Genome content
Genome length	41,524 bps
GC content	56.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	85.38%
Average CDS length	447.26 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1534109_1	PHROG	phrog_117	major tail protein	tail
UHGV-1534109_1	UniRef90	UniRef90_A0A087B693	Putative phage protein gp19	NA
UHGV-1534109_1	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-1534109_1	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1534109_2	Structural annotation	PF12691	NA	NA
UHGV-1534109_3	PHROG	phrog_32608	NA	unknown function
UHGV-1534109_3	Structural annotation	PF17395	NA	NA
UHGV-1534109_4	PHROG	phrog_25853	NA	unknown function
UHGV-1534109_4	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-1534109_4	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-1534109_4	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1534109_5	PHROG	phrog_36776	NA	unknown function
UHGV-1534109_5	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-1534109_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-1534109_6	UniRef90	UniRef90_UPI001BDD8097	major capsid protein	NA
UHGV-1534109_6	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-1534109_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1534109_6	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1534109_7	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1534109_7	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-1534109_7	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-1534109_8	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-1534109_9	PHROG	phrog_36668	NA	unknown function
UHGV-1534109_9	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-1534109_9	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1534109_9	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1534109_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-1534109_10	UniRef90	UniRef90_A0A1X2Z7Y5	Portal protein	NA
UHGV-1534109_10	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-1534109_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1534109_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1534109_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1534109_11	UniRef90	UniRef90_A0A7Y0HWA7	NA	NA
UHGV-1534109_11	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-1534109_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1534109_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1534109_12	PHROG	phrog_226	minor tail protein	tail
UHGV-1534109_12	UniRef90	UniRef90_A0A087B682	Putative phage protein gp1	NA
UHGV-1534109_13	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534109_13	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-1534109_14	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534109_14	UniRef90	UniRef90_B7GS45	HNH endonuclease	NA
UHGV-1534109_14	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-1534109_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1534109_15	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1534109_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1534109_15	UniRef90	UniRef90_A0A2N0THY4	HTH cro/C1-type domain-containing protein	NA
UHGV-1534109_15	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-1534109_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534109_15	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-1534109_17	PHROG	phrog_7698	endolysin	lysis
UHGV-1534109_17	UniRef90	UniRef90_B7GS44	Cpl-7 lysozyme, C-terminal domain protein	NA
UHGV-1534109_17	eggNOG-mapper	548479.HMPREF0573_11206	Pfam:Cpl-7	NA
UHGV-1534109_17	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1534109_17	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1534109_20	eggNOG-mapper	1034345.CAEM01000050_gene1520	NA	NA
UHGV-1534109_25	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-1534109_25	PHROG	phrog_2737	NA	unknown function
UHGV-1534109_25	UniRef90	UniRef90_A0A5M9ZK91	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-1534109_25	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-1534109_25	Pfam	PF04221	RelB antitoxin	RelB
UHGV-1534109_25	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1534109_25	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-1534109_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1534109_26	UniRef90	UniRef90_A0A0L7B5Y1	Growth inhibitor PemK	NA
UHGV-1534109_26	eggNOG-mapper	762211.BSTEL_0268	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1534109_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1534109_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1534109_29	UniRef90	UniRef90_UPI0010EF86EF	Magnesium chelatase subunit ChlI-like ATPase	NA
UHGV-1534109_34	PHROG	phrog_17662	NA	unknown function
UHGV-1534109_34	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-1534109_34	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-1534109_34	Structural annotation	MF_03128, TIGR02495, COG2896	NA	NA
UHGV-1534109_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1534109_37	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-1534109_37	UniRef90	UniRef90_UPI000683DBD8	phage antirepressor KilAC domain-containing protein	NA
UHGV-1534109_37	eggNOG-mapper	1095772.CAHH01000053_gene288	Phage antirepressor protein KilAC domain	NA
UHGV-1534109_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1534109_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1534109_37	Structural annotation	PF03374, COG3645	NA	NA
UHGV-1534109_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1534109_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1534109_38	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-1534109_38	eggNOG-mapper	1688.BCUN_0582	BRO family, N-terminal domain	NA
UHGV-1534109_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1534109_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1534109_38	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1534109_39	PHROG	phrog_908	NA	unknown function
UHGV-1534109_39	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-1534109_40	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-1534109_41	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1534109_41	eggNOG-mapper	1394176.AWUO01000014_gene675	NA	NA
UHGV-1534109_41	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1534109_43	PHROG	phrog_2089	NA	unknown function
UHGV-1534109_43	UniRef90	UniRef90_A0A1V8RER5	NA	NA
UHGV-1534109_47	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1534109_47	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-1534109_47	eggNOG-mapper	1437603.BMON_0158	NA	NA
UHGV-1534109_47	Structural annotation	PF13588, COG1591	NA	NA
UHGV-1534109_56	PHROG	phrog_774	NA	unknown function
UHGV-1534109_56	UniRef90	UniRef90_A0A4R0T603	NA	NA
UHGV-1534109_56	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-1534109_56	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1534109_58	PHROG	phrog_3972	NA	unknown function
UHGV-1534109_58	UniRef90	UniRef90_W6EWQ1	NA	NA
UHGV-1534109_58	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-1534109_58	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-1534109_59	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1534109_59	UniRef90	UniRef90_W6F8T4	NA	NA
UHGV-1534109_59	eggNOG-mapper	1205683.CAKR01000025_gene3612	NA	NA
UHGV-1534109_61	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-1534109_63	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534109_63	UniRef90	UniRef90_A0A5M9ZI68	C2H2-type domain-containing protein	NA
UHGV-1534109_63	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-1534109_63	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1534109_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1534109_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1534109_64	UniRef90	UniRef90_B7GS06	Single-stranded DNA-binding protein	NA
UHGV-1534109_64	eggNOG-mapper	472175.EL18_01208	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1534109_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1534109_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1534109_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1534109_64	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1534109_65	Structural annotation	TIGR00739	NA	NA
UHGV-1534109_66	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1534109_66	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-1534109_66	eggNOG-mapper	1111121.HMPREF1247_0809	NA	NA
UHGV-1534109_68	UniRef90	UniRef90_UPI0018DBBA64	DivIVA domain-containing protein	NA
UHGV-1534109_68	eggNOG-mapper	1147128.BAST_0508	DivIVA protein	NA
UHGV-1534109_68	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-1534109_68	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-1534109_68	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-1534109_68	Structural annotation	MF_02011	NA	NA
UHGV-1534109_70	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1534109_74	UniRef90	UniRef90_V6XWA9	HTH cro/C1-type domain-containing protein	NA
UHGV-1534109_74	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1534109_75	UniRef90	UniRef90_UPI00157FDDA3	helix-turn-helix domain-containing protein	NA
UHGV-1534109_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534109_75	Structural annotation	PF01381, MF_00535, NF041951, COG3093	NA	NA
UHGV-1534109_76	UniRef90	UniRef90_UPI00105466E0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1534109_76	eggNOG-mapper	78345.BMERY_0911	NA	NA
UHGV-1534109_76	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1534109_79	eggNOG-mapper	1137268.AZXF01000014_gene78	NA	NA
UHGV-1534109_80	PHROG	phrog_1281	NA	unknown function
UHGV-1534109_80	UniRef90	UniRef90_A0A0L7B6C0	NA	NA
UHGV-1534109_80	eggNOG-mapper	1437603.BMON_0174	NA	NA
UHGV-1534109_80	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1534109_80	COG	COG3600	NA	NA
UHGV-1534109_80	Structural annotation	PF13274, COG3600	NA	NA