UHGV-1534137

Genome information

Genome length 28,464 bps

CDS count 42

Completeness 76.27% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1534137
vOTU ID	vOTU-036396
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0321925
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.74
Jumbo phage	No

Genome content
Genome length	28,464 bps
GC content	54.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	97.65%
Average CDS length	666.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1534137_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1534137_1	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-1534137_1	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1534137_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1534137_1	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1534137_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1534137_2	UniRef90	UniRef90_R5GRF9	PAPS_reduct domain-containing protein	NA
UHGV-1534137_2	eggNOG-mapper	742740.HMPREF9474_02384	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1534137_2	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1534137_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1534137_2	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-1534137_5	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1534137_5	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534137_5	UniRef90	UniRef90_A0A3D1SGI0	AAA_15 domain-containing protein	NA
UHGV-1534137_5	eggNOG-mapper	445974.CLORAM_02956	nuclear chromosome segregation	NA
UHGV-1534137_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-1534137_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1534137_5	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1534137_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1534137_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1534137_7	UniRef90	UniRef90_A0A3D1SF45	Recombinase	NA
UHGV-1534137_7	eggNOG-mapper	1118054.CAGW01000106_gene3693	RecT family	NA
UHGV-1534137_7	Pfam	PF03837	RecT family	RecT
UHGV-1534137_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1534137_7	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1534137_8	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1534137_8	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1534137_8	UniRef90	UniRef90_A0A3D1SII0	MBL fold metallo-hydrolase	NA
UHGV-1534137_8	eggNOG-mapper	537013.CLOSTMETH_01716	Metallo-beta-lactamase superfamily	NA
UHGV-1534137_8	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1534137_8	dbAPIS	APIS041	NA	NA
UHGV-1534137_8	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1534137_8	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1534137_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1534137_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1534137_9	UniRef90	UniRef90_A0A3D4KZ14	Single-stranded DNA-binding protein	NA
UHGV-1534137_9	eggNOG-mapper	411483.FAEPRAA2165_01975	Single-stranded DNA-binding protein	NA
UHGV-1534137_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1534137_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1534137_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1534137_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1534137_9	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1534137_10	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1534137_10	UniRef90	UniRef90_A0A415UCS3	NA	NA
UHGV-1534137_10	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-1534137_10	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1534137_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1534137_10	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1534137_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1534137_11	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1534137_11	UniRef90	UniRef90_A0A2V2FY53	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1534137_11	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-1534137_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1534137_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1534137_11	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1534137_12	PHROG	phrog_8684	NA	unknown function
UHGV-1534137_12	UniRef90	UniRef90_A0A1C6DXL6	YopX protein	NA
UHGV-1534137_12	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-1534137_12	Pfam	PF09643	YopX protein	YopX
UHGV-1534137_12	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1534137_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1534137_14	PHROG	phrog_3136	NA	unknown function
UHGV-1534137_14	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-1534137_14	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1534137_14	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1534137_14	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1534137_16	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-1534137_18	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1534137_18	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-1534137_18	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-1534137_18	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1534137_18	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1534137_18	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-1534137_19	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1534137_19	UniRef90	UniRef90_A0A6L6XD58	Restriction alleviation protein, Lar family	NA
UHGV-1534137_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1534137_19	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1534137_19	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1534137_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1534137_22	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-1534137_22	Structural annotation	PF05263	NA	NA
UHGV-1534137_23	PHROG	phrog_2412	NA	unknown function
UHGV-1534137_23	UniRef90	UniRef90_A0A8B6J4K4	NA	NA
UHGV-1534137_23	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-1534137_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1534137_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1534137_24	UniRef90	UniRef90_UPI00041C320F	PBSX family phage terminase large subunit	NA
UHGV-1534137_24	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1534137_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1534137_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1534137_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1534137_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1534137_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1534137_25	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-1534137_25	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1534137_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1534137_25	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1534137_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1534137_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1534137_26	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-1534137_26	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1534137_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1534137_26	COG	COG2369	NA	NA
UHGV-1534137_26	Structural annotation	PF06152	NA	NA
UHGV-1534137_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1534137_28	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-1534137_28	eggNOG-mapper	1415775.U729_2604	NA	NA
UHGV-1534137_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-1534137_29	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-1534137_29	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-1534137_29	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1534137_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1534137_30	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-1534137_30	eggNOG-mapper	1449343.JQLQ01000002_gene1331	NA	NA
UHGV-1534137_31	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1534137_31	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-1534137_31	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-1534137_31	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1534137_31	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1534137_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1534137_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1534137_32	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-1534137_32	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1534137_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1534137_32	Structural annotation	PF11114	NA	NA
UHGV-1534137_33	Structural annotation	PF12691	NA	NA
UHGV-1534137_34	PHROG	phrog_820	major tail protein	tail
UHGV-1534137_34	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1534137_34	COG	COG5492	NA	NA
UHGV-1534137_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1534137_35	Structural annotation	PF10666	NA	NA
UHGV-1534137_36	PHROG	phrog_706	NA	unknown function
UHGV-1534137_36	UniRef90	UniRef90_UPI00099586AA	Gp15 family bacteriophage protein	NA
UHGV-1534137_36	eggNOG-mapper	1395513.P343_12620	Bacteriophage Gp15 protein	NA
UHGV-1534137_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1534137_36	Structural annotation	PF06854	NA	NA
UHGV-1534137_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1534137_37	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-1534137_37	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1534137_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1534137_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1534137_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1534137_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1534137_39	PHROG	phrog_6616	tail protein	tail
UHGV-1534137_39	eggNOG-mapper	1395587.P364_0122010	NA	NA
UHGV-1534137_40	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1534137_40	Structural annotation	PF03426, PF21621, NF033675, COG5156	NA	NA
UHGV-1534137_41	PHROG	phrog_24451	NA	unknown function
UHGV-1534137_41	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA