UHGV-1534244

Genome information

vOTU vOTU-020283

Genome length 33,689 bps

CDS count 46

Completeness 64.94% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-1534244
vOTU ID	vOTU-020283
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0289521
BioSample	SAMN00075991
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.3
Jumbo phage	No

Genome content
Genome length	33,689 bps
GC content	56.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.82%
Average CDS length	659.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1534244_1	UniRef90	UniRef90_A0A6I2U7B1	NA	NA
UHGV-1534244_1	eggNOG-mapper	1235835.C814_01265	NA	NA
UHGV-1534244_2	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-1534244_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1534244_2	UniRef90	UniRef90_A0A1C5XWF5	HTH-type transcriptional regulator PuuR	NA
UHGV-1534244_2	eggNOG-mapper	1235797.C816_00514	NA	NA
UHGV-1534244_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1534244_2	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1534244_2	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1534244_3	PHROG	phrog_28749	NA	unknown function
UHGV-1534244_3	UniRef90	UniRef90_UPI001897AF61	NA	NA
UHGV-1534244_3	eggNOG-mapper	742738.HMPREF9460_03937	NA	NA
UHGV-1534244_3	Pfam	PF19537	NA	DUF6061
UHGV-1534244_3	Structural annotation	PF19537	NA	NA
UHGV-1534244_4	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1534244_4	PHROG	phrog_6357	NA	unknown function
UHGV-1534244_4	UniRef90	UniRef90_A0A1C5NN30	DNA repair protein RadA	NA
UHGV-1534244_4	eggNOG-mapper	1235835.C814_01956	AAA domain	NA
UHGV-1534244_4	Pfam	PF13481	AAA domain	AAA_25
UHGV-1534244_4	COG	COG3598	RecA-family ATPase	NA
UHGV-1534244_4	Structural annotation	PF03796, MF_01498, TIGR00416, COG3598	NA	NA
UHGV-1534244_5	PHROG	phrog_30322	NA	unknown function
UHGV-1534244_5	eggNOG-mapper	411467.BACCAP_00978	NA	NA
UHGV-1534244_5	Structural annotation	NF040666	NA	NA
UHGV-1534244_6	KOfam	K14059	int; integrase	NA
UHGV-1534244_6	PHROG	phrog_1	integrase	integration and excision
UHGV-1534244_6	UniRef90	UniRef90_F4XAJ7	Tyr recombinase domain-containing protein	NA
UHGV-1534244_6	eggNOG-mapper	552398.HMPREF0866_00315	Belongs to the 'phage' integrase family	NA
UHGV-1534244_6	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1534244_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1534244_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1534244_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1534244_6	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1534244_7	PHROG	phrog_989	NA	unknown function
UHGV-1534244_7	UniRef90	UniRef90_R9LKX2	Mga domain-containing protein	NA
UHGV-1534244_7	eggNOG-mapper	411467.BACCAP_00959	Mga helix-turn-helix domain	NA
UHGV-1534244_8	UniRef90	UniRef90_R9LKT8	HTH cro/C1-type domain-containing protein	NA
UHGV-1534244_8	eggNOG-mapper	1235835.C814_01952	Helix-turn-helix XRE-family like proteins	NA
UHGV-1534244_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534244_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1534244_8	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1534244_9	eggNOG-mapper	555088.DealDRAFT_0725	NA	NA
UHGV-1534244_9	Pfam	PF20251	Bacterial Ig-like domain	Big_14
UHGV-1534244_10	PHROG	phrog_31146	NA	unknown function
UHGV-1534244_10	UniRef90	UniRef90_A0A1Y3S902	Recombinase	NA
UHGV-1534244_10	eggNOG-mapper	742742.HMPREF9452_01849	protein involved in exopolysaccharide biosynthesis	NA
UHGV-1534244_10	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1534244_10	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1534244_10	Structural annotation	PF01076, NF041497	NA	NA
UHGV-1534244_11	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1534244_11	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1534244_11	UniRef90	UniRef90_A0A1Y4UTA7	AAA domain-containing protein	NA
UHGV-1534244_11	eggNOG-mapper	1408437.JNJN01000018_gene2316	AAA domain	NA
UHGV-1534244_11	Pfam	PF13481	AAA domain	AAA_25
UHGV-1534244_11	COG	COG3598	RecA-family ATPase	NA
UHGV-1534244_11	Structural annotation	PF03796, MF_01498, TIGR00416, COG3598	NA	NA
UHGV-1534244_12	PHROG	phrog_30322	NA	unknown function
UHGV-1534244_12	eggNOG-mapper	742742.HMPREF9452_01852	NA	NA
UHGV-1534244_12	Structural annotation	NF040666	NA	NA
UHGV-1534244_13	KOfam	K14059	int; integrase	NA
UHGV-1534244_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1534244_13	UniRef90	UniRef90_A0A0W7TLX5	Integrase	NA
UHGV-1534244_13	eggNOG-mapper	742742.HMPREF9452_01853	Belongs to the 'phage' integrase family	NA
UHGV-1534244_13	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1534244_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1534244_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1534244_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1534244_13	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1534244_14	PHROG	phrog_989	NA	unknown function
UHGV-1534244_14	UniRef90	UniRef90_A0A6N3EYG5	ICEBs1 excisionase	NA
UHGV-1534244_14	eggNOG-mapper	1408437.JNJN01000080_gene2072	NA	NA
UHGV-1534244_15	UniRef90	UniRef90_V2YIM3	HTH cro/C1-type domain-containing protein	NA
UHGV-1534244_15	eggNOG-mapper	1378168.N510_00084	NA	NA
UHGV-1534244_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534244_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1534244_15	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1534244_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1534244_16	PHROG	phrog_20388	endolysin	lysis
UHGV-1534244_16	UniRef90	UniRef90_U2QMX3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1534244_16	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1534244_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1534244_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1534244_16	Structural annotation	PF01510, PF18350, MF_04111, MF_01354, NF008758, COG3023, COG2139	NA	NA
UHGV-1534244_17	PHROG	phrog_6918	holin	lysis
UHGV-1534244_17	UniRef90	UniRef90_U2S4Z6	Phage holin, LL-H family	NA
UHGV-1534244_17	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1534244_17	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1534244_17	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1534244_18	PHROG	phrog_27228	NA	unknown function
UHGV-1534244_18	eggNOG-mapper	1226322.HMPREF1545_03574	NA	NA
UHGV-1534244_19	PHROG	phrog_9428	NA	unknown function
UHGV-1534244_19	UniRef90	UniRef90_A0A6I2R426	Serine/threonine protein kinase	NA
UHGV-1534244_19	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-1534244_20	PHROG	phrog_35850	NA	unknown function
UHGV-1534244_20	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1534244_21	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1534244_21	UniRef90	UniRef90_U2QMX9	Fibronectin type-III domain-containing protein	NA
UHGV-1534244_21	eggNOG-mapper	1226322.HMPREF1545_03571	cellulose binding	NA
UHGV-1534244_21	Pfam	PF19789	NA	DUF6273
UHGV-1534244_21	COG	COG4447	NA	NA
UHGV-1534244_21	Structural annotation	PF19789, PF18911, PF00041, MF_04116, NF032891, COG3979	NA	NA
UHGV-1534244_22	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1534244_22	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1534244_22	UniRef90	UniRef90_U2S500	Reverse transcriptase	NA
UHGV-1534244_22	eggNOG-mapper	1226322.HMPREF1545_03570	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1534244_22	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1534244_22	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1534244_22	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1534244_22	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1534244_23	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1534244_23	UniRef90	UniRef90_A0A3A8YGU8	Four helix bundle protein	NA
UHGV-1534244_23	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-1534244_23	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-1534244_24	PHROG	phrog_21058	NA	unknown function
UHGV-1534244_24	Structural annotation	PF15935	NA	NA
UHGV-1534244_25	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1534244_25	eggNOG-mapper	1226322.HMPREF1545_03568	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1534244_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1534244_25	Structural annotation	PF12571	NA	NA
UHGV-1534244_26	PHROG	phrog_1160	baseplate protein	tail
UHGV-1534244_26	UniRef90	UniRef90_U7USB8	PF11041 domain protein	NA
UHGV-1534244_26	eggNOG-mapper	1226322.HMPREF1545_03567	NA	NA
UHGV-1534244_27	PHROG	phrog_6	baseplate protein	tail
UHGV-1534244_27	UniRef90	UniRef90_U2QMY6	Baseplate_J domain-containing protein	NA
UHGV-1534244_27	eggNOG-mapper	1226322.HMPREF1545_03566	Baseplate J-like protein	NA
UHGV-1534244_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1534244_27	COG	COG3299	NA	NA
UHGV-1534244_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1534244_28	PHROG	phrog_120	baseplate protein	tail
UHGV-1534244_28	UniRef90	UniRef90_A0A3A8YWM5	NA	NA
UHGV-1534244_28	eggNOG-mapper	1226322.HMPREF1545_03565	NA	NA
UHGV-1534244_28	Pfam	PF10934	NA	DUF2634
UHGV-1534244_28	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-1534244_29	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-1534244_29	UniRef90	UniRef90_UPI001AB035F2	PAAR domain-containing protein	NA
UHGV-1534244_29	eggNOG-mapper	1226322.HMPREF1545_03564	PAAR motif	NA
UHGV-1534244_29	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-1534244_29	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-1534244_29	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-1534244_30	UniRef90	UniRef90_U2QNS7	Gp138_N domain-containing protein	NA
UHGV-1534244_30	eggNOG-mapper	1226322.HMPREF1545_03563	Baseplate assembly protein	NA
UHGV-1534244_30	Pfam	PF18352	NA	Gp138_N
UHGV-1534244_30	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1534244_30	Structural annotation	PF18352, MF_01345_A, TIGR01644, COG4540	NA	NA
UHGV-1534244_31	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1534244_31	eggNOG-mapper	1226322.HMPREF1545_03562	NA	NA
UHGV-1534244_31	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1534244_32	PHROG	phrog_1264	NA	unknown function
UHGV-1534244_32	eggNOG-mapper	1226322.HMPREF1545_03561	NA	NA
UHGV-1534244_33	PHROG	phrog_37482	NA	unknown function
UHGV-1534244_33	eggNOG-mapper	1226322.HMPREF1545_03560	NA	NA
UHGV-1534244_33	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1534244_33	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1534244_34	PHROG	phrog_28083	NA	unknown function
UHGV-1534244_34	UniRef90	UniRef90_A0A1C5ZE14	Phage-related protein	NA
UHGV-1534244_34	eggNOG-mapper	1226322.HMPREF1545_03559	Phage tail tape measure protein TP901	NA
UHGV-1534244_34	COG	COG5283	Phage-related tail protein	NA
UHGV-1534244_34	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-1534244_35	PHROG	phrog_30081	NA	unknown function
UHGV-1534244_35	UniRef90	UniRef90_A0A6I2R0I2	Acetyltransferase	NA
UHGV-1534244_36	PHROG	phrog_1778	NA	unknown function
UHGV-1534244_36	eggNOG-mapper	1226322.HMPREF1545_03557	NA	NA
UHGV-1534244_36	Structural annotation	PF16462	NA	NA
UHGV-1534244_37	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1534244_37	UniRef90	UniRef90_UPI000B36D878	NA	NA
UHGV-1534244_37	eggNOG-mapper	1226322.HMPREF1545_03556	NA	NA
UHGV-1534244_37	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-1534244_37	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1534244_38	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1534244_38	UniRef90	UniRef90_UPI000B38F23E	NA	NA
UHGV-1534244_38	eggNOG-mapper	1226322.HMPREF1545_03555	NA	NA
UHGV-1534244_38	Pfam	PF11863	NA	DUF3383
UHGV-1534244_38	Structural annotation	PF11863, COG3497	NA	NA
UHGV-1534244_39	PHROG	phrog_1232	NA	unknown function
UHGV-1534244_39	eggNOG-mapper	411902.CLOBOL_05660	NA	NA
UHGV-1534244_39	Structural annotation	PF08873	NA	NA
UHGV-1534244_40	PHROG	phrog_22797	NA	unknown function
UHGV-1534244_40	eggNOG-mapper	1226322.HMPREF1545_03553	NA	NA
UHGV-1534244_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1534244_41	PHROG	phrog_222	tail protein	tail
UHGV-1534244_41	eggNOG-mapper	1226322.HMPREF1545_03552	NA	NA
UHGV-1534244_42	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1534244_42	UniRef90	UniRef90_A0A416GU25	Phage gp6-like head-tail connector protein	NA
UHGV-1534244_42	eggNOG-mapper	1226322.HMPREF1545_03551	NA	NA
UHGV-1534244_42	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-1534244_43	PHROG	phrog_28309	NA	unknown function
UHGV-1534244_44	PHROG	phrog_5707	NA	unknown function
UHGV-1534244_44	eggNOG-mapper	1226322.HMPREF1545_03549	NA	NA
UHGV-1534244_44	Structural annotation	PF10807, MF_01372, NF007541	NA	NA
UHGV-1534244_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-1534244_45	UniRef90	UniRef90_U2QNU2	Phage capsid family protein	NA
UHGV-1534244_45	eggNOG-mapper	1226322.HMPREF1545_03548	Phage capsid family	NA
UHGV-1534244_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1534244_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1534244_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1534244_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1534244_46	KOfam	K06904	NA	NA
UHGV-1534244_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1534244_46	UniRef90	UniRef90_A0A844IZX3	HK97 family phage prohead protease	NA
UHGV-1534244_46	eggNOG-mapper	1226322.HMPREF1545_03547	Caudovirus prohead serine protease	NA
UHGV-1534244_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1534244_46	COG	COG3740	Phage head maturation protease	NA