UHGV-1534251

Genome information

Genome length 33,842 bps

CDS count 40

Completeness 89.85% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-1534251
vOTU ID	vOTU-024979
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242223
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.85
Jumbo phage	No

Genome content
Genome length	33,842 bps
GC content	41.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.56%
Average CDS length	784.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1534251_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1534251_1	PHROG	phrog_6745	endolysin	lysis
UHGV-1534251_1	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-1534251_1	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-1534251_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1534251_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1534251_1	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-1534251_2	PHROG	phrog_1129	holin	lysis
UHGV-1534251_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-1534251_2	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1534251_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1534251_2	Structural annotation	PF16079	NA	NA
UHGV-1534251_3	PHROG	phrog_4105	NA	unknown function
UHGV-1534251_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1534251_4	UniRef90	UniRef90_A0A417CS53	Peptidase S74 domain-containing protein	NA
UHGV-1534251_4	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-1534251_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1534251_5	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-1534251_5	Structural annotation	PF01301, PF03944, MF_00279, NF040743, COG3622	NA	NA
UHGV-1534251_6	PHROG	phrog_18110	NA	unknown function
UHGV-1534251_6	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1534251_6	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-1534251_6	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1534251_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1534251_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1534251_6	COG	COG4926	Phage-related protein	NA
UHGV-1534251_7	PHROG	phrog_1401	NA	unknown function
UHGV-1534251_7	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-1534251_7	Structural annotation	PF07761	NA	NA
UHGV-1534251_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1534251_8	UniRef90	UniRef90_A5ZPK8	Putative phage tail component domain protein	NA
UHGV-1534251_8	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-1534251_8	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-1534251_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1534251_8	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-1534251_9	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-1534251_9	PHROG	phrog_5218	NA	unknown function
UHGV-1534251_9	UniRef90	UniRef90_A0A174CPF9	Phage-related minor tail protein	NA
UHGV-1534251_9	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-1534251_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1534251_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1534251_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1534251_9	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1534251_11	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-1534251_11	Structural annotation	PF11836	NA	NA
UHGV-1534251_12	PHROG	phrog_88	major tail protein	tail
UHGV-1534251_12	UniRef90	UniRef90_A5ZPL3	Phage major tail protein, phi13 family	NA
UHGV-1534251_12	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-1534251_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1534251_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1534251_13	PHROG	phrog_78	tail terminator	connector
UHGV-1534251_13	eggNOG-mapper	1286171.EAL2_c05940	NA	NA
UHGV-1534251_13	Structural annotation	PF05657	NA	NA
UHGV-1534251_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1534251_14	UniRef90	UniRef90_UPI0013905FA6	HK97 gp10 family phage protein	NA
UHGV-1534251_14	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-1534251_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1534251_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1534251_14	Structural annotation	TIGR01725	NA	NA
UHGV-1534251_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1534251_16	PHROG	phrog_5223	neck protein	connector
UHGV-1534251_16	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-1534251_16	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-1534251_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1534251_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1534251_17	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-1534251_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1534251_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1534251_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1534251_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1534251_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1534251_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1534251_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1534251_18	UniRef90	UniRef90_A0A4Q7PKT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1534251_18	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-1534251_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1534251_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1534251_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1534251_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1534251_19	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-1534251_19	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1534251_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1534251_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1534251_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1534251_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1534251_20	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-1534251_20	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-1534251_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1534251_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1534251_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1534251_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1534251_21	PHROG	phrog_1066	NA	unknown function
UHGV-1534251_21	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-1534251_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1534251_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534251_22	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-1534251_22	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-1534251_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1534251_23	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-1534251_23	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-1534251_23	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-1534251_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1534251_25	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-1534251_25	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-1534251_25	Structural annotation	PF04545	NA	NA
UHGV-1534251_26	PHROG	phrog_19011	NA	unknown function
UHGV-1534251_26	Structural annotation	PF18359, COG4466	NA	NA
UHGV-1534251_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1534251_30	UniRef90	UniRef90_UPI001D0718C8	Lar family restriction alleviation protein	NA
UHGV-1534251_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1534251_30	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1534251_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1534251_30	Structural annotation	TIGR03655	NA	NA
UHGV-1534251_33	PHROG	phrog_15982	NA	unknown function
UHGV-1534251_33	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-1534251_33	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-1534251_33	Pfam	PF12961	NA	DUF3850
UHGV-1534251_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1534251_33	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-1534251_34	PHROG	phrog_8470	NA	unknown function
UHGV-1534251_34	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-1534251_34	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-1534251_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1534251_34	Structural annotation	PF14284	NA	NA
UHGV-1534251_35	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-1534251_36	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1534251_36	UniRef90	UniRef90_A0A415L5F5	NA	NA
UHGV-1534251_36	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-1534251_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1534251_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1534251_36	Structural annotation	PF14297	NA	NA
UHGV-1534251_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1534251_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1534251_37	UniRef90	UniRef90_A0A415L586	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1534251_37	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-1534251_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1534251_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1534251_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1534251_39	PHROG	phrog_6058	NA	unknown function
UHGV-1534251_39	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-1534251_39	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA