UHGV-1534692

Genome information

vOTU vOTU-019183

Genome length 35,378 bps

CDS count 51

Completeness 87.18% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1534692
vOTU ID	vOTU-019183
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0272360
BioSample	SAMEA2738016
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.21
Jumbo phage	No

Genome content
Genome length	35,378 bps
GC content	39.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.42%
Average CDS length	652.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1534692_1	KOfam	K14059	int; integrase	NA
UHGV-1534692_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1534692_1	UniRef90	UniRef90_A0A847CB94	Site-specific integrase	NA
UHGV-1534692_1	eggNOG-mapper	908340.HMPREF9406_3938	Belongs to the 'phage' integrase family	NA
UHGV-1534692_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1534692_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1534692_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1534692_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1534692_2	UniRef90	UniRef90_A0A4R7Z7D1	Type III toxin-antitoxin system toxin ToxN	NA
UHGV-1534692_2	eggNOG-mapper	742722.HMPREF9463_00509	NA	NA
UHGV-1534692_2	Structural annotation	PF13958	NA	NA
UHGV-1534692_3	PHROG	phrog_32500	NA	unknown function
UHGV-1534692_3	UniRef90	UniRef90_A0A7V0UAU2	KilA-N domain-containing protein	NA
UHGV-1534692_3	eggNOG-mapper	1278311.AUAL01000023_gene1510	KilA-N domain	NA
UHGV-1534692_3	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1534692_5	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1534692_5	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1534692_5	UniRef90	UniRef90_J4W719	Type I restriction enzyme R protein N-terminal domain protein	NA
UHGV-1534692_5	eggNOG-mapper	936375.HMPREF1152_0653	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1534692_5	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1534692_5	COG	COG4748	NA	NA
UHGV-1534692_5	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1534692_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1534692_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1534692_6	UniRef90	UniRef90_J5UKW7	Peptidase S24-like protein	NA
UHGV-1534692_6	eggNOG-mapper	936375.HMPREF1152_1044	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1534692_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1534692_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1534692_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1534692_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1534692_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1534692_7	UniRef90	UniRef90_J5UKV5	DNA-binding helix-turn-helix protein	NA
UHGV-1534692_7	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-1534692_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1534692_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534692_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1534692_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1534692_9	PHROG	phrog_585	NA	unknown function
UHGV-1534692_9	UniRef90	UniRef90_UPI00129D2984	NA	NA
UHGV-1534692_9	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-1534692_9	Pfam	PF10711	NA	DUF2513
UHGV-1534692_9	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-1534692_11	UniRef90	UniRef90_J6HLB1	DNA-binding helix-turn-helix protein	NA
UHGV-1534692_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1534692_12	Structural annotation	PF11372	NA	NA
UHGV-1534692_14	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-1534692_14	PHROG	phrog_359	DNA methyltransferase	other
UHGV-1534692_14	UniRef90	UniRef90_A0A1C0AG56	DNA methyltransferase	NA
UHGV-1534692_14	eggNOG-mapper	887325.HMPREF0381_0367	MT-A70	NA
UHGV-1534692_14	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-1534692_14	Pfam	PF05063	MT-A70	MT-A70
UHGV-1534692_14	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-1534692_14	Structural annotation	PF05063, NF010253, COG4725	NA	NA
UHGV-1534692_19	PHROG	phrog_1499	NA	unknown function
UHGV-1534692_19	UniRef90	UniRef90_A0A7Y8VRE2	AAA family ATPase	NA
UHGV-1534692_19	eggNOG-mapper	1140001.I571_01812	AAA domain	NA
UHGV-1534692_19	Pfam	PF13476	AAA domain	AAA_23
UHGV-1534692_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1534692_19	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1534692_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1534692_20	UniRef90	UniRef90_A0A7Y9B0I5	ATP-binding protein	NA
UHGV-1534692_20	eggNOG-mapper	1403946.Q615_SPAC00127G0154	AAA domain	NA
UHGV-1534692_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-1534692_20	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1534692_21	PHROG	phrog_2698	NA	unknown function
UHGV-1534692_21	UniRef90	UniRef90_A0A4V0ECJ9	NA	NA
UHGV-1534692_21	eggNOG-mapper	1403946.Q615_SPAC00127G0153	NA	NA
UHGV-1534692_21	Structural annotation	PF05037	NA	NA
UHGV-1534692_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1534692_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1534692_22	UniRef90	UniRef90_A0A7Y9B0R7	DEAD/DEAH box helicase	NA
UHGV-1534692_22	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-1534692_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1534692_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1534692_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1534692_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1534692_22	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1534692_24	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1534692_24	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1534692_24	UniRef90	UniRef90_A0A7Y9B0R4	AAA family ATPase	NA
UHGV-1534692_24	eggNOG-mapper	936580.HMPREF1516_0733	Primase C terminal 2 (PriCT-2)	NA
UHGV-1534692_24	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1534692_24	Pfam	PF13481	AAA domain	AAA_25
UHGV-1534692_24	COG	COG3598	RecA-family ATPase	NA
UHGV-1534692_24	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1534692_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1534692_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1534692_25	UniRef90	UniRef90_A0A7Y8VRA1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1534692_25	eggNOG-mapper	1158614.I592_02277	Endodeoxyribonuclease RusA	NA
UHGV-1534692_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1534692_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1534692_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1534692_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1534692_26	UniRef90	UniRef90_A0A2I7RZC6	Coil containing protein	NA
UHGV-1534692_26	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-1534692_26	Structural annotation	PF02185	NA	NA
UHGV-1534692_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1534692_27	eggNOG-mapper	1232428.CAVO010000003_gene1014	NA	NA
UHGV-1534692_27	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1534692_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1534692_29	UniRef90	UniRef90_UPI001D08C3AD	phage terminase small subunit	NA
UHGV-1534692_29	eggNOG-mapper	1235792.C808_05361	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-1534692_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1534692_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1534692_29	COG	COG5484	NA	NA
UHGV-1534692_29	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1534692_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1534692_30	PHROG	phrog_29775	NA	unknown function
UHGV-1534692_30	UniRef90	UniRef90_J4WCU7	Terminase, large subunit, PBSX family	NA
UHGV-1534692_30	eggNOG-mapper	936375.HMPREF1152_1069	Phage terminase, large subunit, PBSX family	NA
UHGV-1534692_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1534692_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1534692_30	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1534692_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-1534692_31	UniRef90	UniRef90_A0A858BRS2	Phage portal protein	NA
UHGV-1534692_31	eggNOG-mapper	936375.HMPREF1152_1070	NA	NA
UHGV-1534692_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1534692_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1534692_32	UniRef90	UniRef90_J5UKQ9	Phage minor capsid protein 2	NA
UHGV-1534692_32	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-1534692_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1534692_32	COG	COG2369	NA	NA
UHGV-1534692_34	PHROG	phrog_1233	NA	unknown function
UHGV-1534692_34	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1534692_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1534692_35	UniRef90	UniRef90_J5UL20	Phage minor structural protein GP20	NA
UHGV-1534692_35	eggNOG-mapper	610130.Closa_1394	Phage minor structural protein GP20	NA
UHGV-1534692_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1534692_35	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1534692_36	PHROG	phrog_283	major head protein	head and packaging
UHGV-1534692_36	UniRef90	UniRef90_J5WNS5	Coat protein, P22 family	NA
UHGV-1534692_36	eggNOG-mapper	936375.HMPREF1152_1076	P22 coat protein - gene protein 5	NA
UHGV-1534692_36	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1534692_36	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1534692_37	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1534692_38	PHROG	phrog_3366	NA	unknown function
UHGV-1534692_38	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1534692_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1534692_39	UniRef90	UniRef90_UPI0003FD237D	minor capsid protein	NA
UHGV-1534692_39	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-1534692_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1534692_39	Structural annotation	PF11114	NA	NA
UHGV-1534692_40	PHROG	phrog_3266	tail completion	connector
UHGV-1534692_40	Structural annotation	PF12691	NA	NA
UHGV-1534692_41	PHROG	phrog_3099	NA	unknown function
UHGV-1534692_41	eggNOG-mapper	1120998.AUFC01000030_gene2241	NA	NA
UHGV-1534692_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1534692_42	PHROG	phrog_11299	NA	unknown function
UHGV-1534692_43	PHROG	phrog_706	NA	unknown function
UHGV-1534692_43	UniRef90	UniRef90_J6HLF8	Bacteriophage Gp15 protein	NA
UHGV-1534692_43	eggNOG-mapper	1120998.AUFC01000030_gene2243	NA	NA
UHGV-1534692_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1534692_43	Structural annotation	PF06854	NA	NA
UHGV-1534692_44	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1534692_44	UniRef90	UniRef90_A0A2S0L695	TMP_3 domain-containing protein	NA
UHGV-1534692_44	eggNOG-mapper	936375.HMPREF1152_1084	tape measure	NA
UHGV-1534692_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1534692_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1534692_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1534692_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1534692_45	UniRef90	UniRef90_J6HLC5	Phage tail domain protein	NA
UHGV-1534692_45	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1534692_46	PHROG	phrog_538	minor tail protein	tail
UHGV-1534692_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1534692_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1534692_47	PHROG	phrog_9534	head protein	head and packaging
UHGV-1534692_47	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-1534692_47	eggNOG-mapper	936375.HMPREF1152_1087	NA	NA
UHGV-1534692_47	Structural annotation	PF20747	NA	NA
UHGV-1534692_49	PHROG	phrog_1009	NA	unknown function
UHGV-1534692_49	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-1534692_50	PHROG	phrog_962	holin	lysis
UHGV-1534692_50	UniRef90	UniRef90_J6HE40	Holin, phage phi LC3 family	NA
UHGV-1534692_50	eggNOG-mapper	936375.HMPREF1152_1091	Bacteriophage holin	NA
UHGV-1534692_50	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1534692_50	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1534692_50	COG	COG5546	NA	NA
UHGV-1534692_50	Structural annotation	COG5546	NA	NA
UHGV-1534692_51	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-1534692_51	PHROG	phrog_7854	endolysin	lysis
UHGV-1534692_51	UniRef90	UniRef90_UPI0018C3BCA6	peptidoglycan-binding protein	NA
UHGV-1534692_51	eggNOG-mapper	1120936.KB907210_gene5864	CHAP domain	NA
UHGV-1534692_51	Pfam	PF05257	CHAP domain	CHAP
UHGV-1534692_51	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1534692_51	COG	COG3942	Surface antigen	NA
UHGV-1534692_51	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA