UHGV-1535526

Genome information

Genome length 31,827 bps

CDS count 26

Completeness 75.35% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1535526
vOTU ID	vOTU-023088
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0231363
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.91
Jumbo phage	No

Genome content
Genome length	31,827 bps
GC content	43.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	97.19%
Average CDS length	1,194.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1535526_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1535526_2	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1535526_2	UniRef90	UniRef90_UPI001D08F556	terminase small subunit	NA
UHGV-1535526_2	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1535526_2	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1535526_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1535526_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1535526_2	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1535526_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1535526_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1535526_3	UniRef90	UniRef90_A0A7G5MSQ6	PBSX family phage terminase large subunit	NA
UHGV-1535526_3	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-1535526_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1535526_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1535526_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1535526_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1535526_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-1535526_4	UniRef90	UniRef90_A0A174L8Y1	Phage portal protein, putative, A118 family	NA
UHGV-1535526_4	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-1535526_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1535526_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1535526_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1535526_5	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-1535526_5	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-1535526_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1535526_5	COG	COG2369	NA	NA
UHGV-1535526_5	Structural annotation	PF06152	NA	NA
UHGV-1535526_7	PHROG	phrog_1048	NA	unknown function
UHGV-1535526_7	UniRef90	UniRef90_A0A396NPG3	NA	NA
UHGV-1535526_7	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1535526_7	Pfam	PF11195	NA	DUF2829
UHGV-1535526_7	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1535526_7	Structural annotation	PF11195	NA	NA
UHGV-1535526_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1535526_8	UniRef90	UniRef90_UPI001319F292	phage scaffolding protein	NA
UHGV-1535526_8	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-1535526_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1535526_9	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-1535526_9	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1535526_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1535526_10	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-1535526_11	PHROG	phrog_3366	NA	unknown function
UHGV-1535526_11	Structural annotation	PF20536	NA	NA
UHGV-1535526_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1535526_12	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-1535526_12	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-1535526_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1535526_12	Structural annotation	PF11114	NA	NA
UHGV-1535526_13	PHROG	phrog_3266	tail completion	connector
UHGV-1535526_13	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-1535526_13	Structural annotation	PF12691	NA	NA
UHGV-1535526_14	PHROG	phrog_820	major tail protein	tail
UHGV-1535526_14	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-1535526_14	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-1535526_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1535526_16	PHROG	phrog_706	NA	unknown function
UHGV-1535526_16	UniRef90	UniRef90_A0A1M6B1I0	Bacteriophage Gp15 protein	NA
UHGV-1535526_16	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-1535526_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1535526_16	Structural annotation	PF06854	NA	NA
UHGV-1535526_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1535526_17	UniRef90	UniRef90_R9L0T3	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1535526_17	eggNOG-mapper	411459.RUMOBE_01065	phage tail tape measure protein	NA
UHGV-1535526_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1535526_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1535526_17	COG	COG5283	Phage-related tail protein	NA
UHGV-1535526_17	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1535526_18	UniRef90	UniRef90_A0A412ZBV2	MtfA protein	NA
UHGV-1535526_18	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1535526_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-1535526_18	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1535526_19	PHROG	phrog_3558	tail protein	tail
UHGV-1535526_19	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1535526_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1535526_19	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1535526_19	COG	COG4926	Phage-related protein	NA
UHGV-1535526_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1535526_21	PHROG	phrog_14959	NA	unknown function
UHGV-1535526_21	UniRef90	UniRef90_UPI001570256E	NA	NA
UHGV-1535526_21	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-1535526_22	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1535526_22	UniRef90	UniRef90_UPI0011868A0C	acyl carrier protein	NA
UHGV-1535526_22	eggNOG-mapper	693746.OBV_20210	NA	NA
UHGV-1535526_22	Structural annotation	PF14301	NA	NA
UHGV-1535526_23	PHROG	phrog_199	holin	lysis
UHGV-1535526_23	UniRef90	UniRef90_A0A3D3UA08	Holin	NA
UHGV-1535526_23	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-1535526_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1535526_23	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1535526_23	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1535526_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1535526_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1535526_24	PHROG	phrog_435	endolysin	lysis
UHGV-1535526_24	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-1535526_24	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1535526_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1535526_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1535526_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1535526_24	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1535526_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1535526_25	PHROG	phrog_95	integrase	integration and excision
UHGV-1535526_25	UniRef90	UniRef90_A0A176U276	Resolvase protein	NA
UHGV-1535526_25	eggNOG-mapper	755731.Clo1100_0789	resolvase	NA
UHGV-1535526_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1535526_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-1535526_25	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1535526_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1535526_25	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1535526_26	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1535526_26	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1535526_26	UniRef90	UniRef90_A0A176U291	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1535526_26	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1535526_26	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1535526_26	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1535526_26	Structural annotation	PF15919, COG1598	NA	NA