UHGV-1535956

Genome information

Genome length 35,372 bps

CDS count 55

Completeness 93.94% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1535956
vOTU ID	vOTU-073074
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0281451
BioSample	SAMN02333993
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.91
Jumbo phage	No

Genome content
Genome length	35,372 bps
GC content	50.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.57%
Average CDS length	591.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1535956_2	PHROG	phrog_29609	NA	unknown function
UHGV-1535956_2	eggNOG-mapper	478749.BRYFOR_09555	NA	NA
UHGV-1535956_4	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1535956_4	UniRef90	UniRef90_R6WQ42	Conserved domain protein	NA
UHGV-1535956_4	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-1535956_8	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-1535956_8	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1535956_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1535956_10	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1535956_10	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1535956_11	KOfam	K07273	acm; lysozyme	NA
UHGV-1535956_11	PHROG	phrog_291	endolysin	lysis
UHGV-1535956_11	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-1535956_11	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-1535956_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1535956_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1535956_11	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-1535956_13	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-1535956_13	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-1535956_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1535956_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1535956_15	PHROG	phrog_32639	NA	unknown function
UHGV-1535956_15	Structural annotation	PF21611	NA	NA
UHGV-1535956_16	KOfam	K14059	int; integrase	NA
UHGV-1535956_16	PHROG	phrog_1	integrase	integration and excision
UHGV-1535956_16	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-1535956_16	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-1535956_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1535956_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1535956_16	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1535956_17	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-1535956_17	COG	COG4675	Phage tail collar domain	NA
UHGV-1535956_18	PHROG	phrog_1101	tail protein	tail
UHGV-1535956_18	UniRef90	UniRef90_A0A3B9DV75	Phage-tail_3 domain-containing protein	NA
UHGV-1535956_18	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-1535956_18	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1535956_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1535956_18	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-1535956_19	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1535956_19	PHROG	phrog_329	minor tail protein	tail
UHGV-1535956_19	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-1535956_19	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-1535956_19	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1535956_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1535956_19	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-1535956_20	PHROG	phrog_778	tail assembly protein	tail
UHGV-1535956_20	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-1535956_20	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-1535956_20	Pfam	PF09931	NA	DUF2163
UHGV-1535956_20	COG	COG5449	NA	NA
UHGV-1535956_20	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-1535956_21	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-1535956_21	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-1535956_21	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-1535956_21	Pfam	PF09343	NA	DUF2460
UHGV-1535956_21	COG	COG5448	NA	NA
UHGV-1535956_21	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-1535956_22	PHROG	phrog_13338	NA	unknown function
UHGV-1535956_22	UniRef90	UniRef90_H1CYW8	Tape measure domain-containing protein	NA
UHGV-1535956_22	eggNOG-mapper	742743.HMPREF9453_00556	tape measure	NA
UHGV-1535956_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1535956_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1535956_24	PHROG	phrog_1407	major tail protein	tail
UHGV-1535956_24	UniRef90	UniRef90_UPI00034E16F7	phage tail tube protein	NA
UHGV-1535956_24	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-1535956_24	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1535956_24	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1535956_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1535956_25	Structural annotation	PF16807	NA	NA
UHGV-1535956_26	UniRef90	UniRef90_UPI00034E17BA	head-tail adaptor protein	NA
UHGV-1535956_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1535956_27	UniRef90	UniRef90_H1CYX3	HK97 family phage major capsid protein	NA
UHGV-1535956_27	eggNOG-mapper	742743.HMPREF9453_00561	Phage capsid family	NA
UHGV-1535956_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1535956_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1535956_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1535956_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1535956_29	Pfam	PF11836	Phage tail tube protein, GTA-gp10	Phage_TAC_11
UHGV-1535956_29	Structural annotation	PF19591	NA	NA
UHGV-1535956_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-1535956_30	UniRef90	UniRef90_UPI00094F25F3	phage portal protein	NA
UHGV-1535956_30	eggNOG-mapper	742743.HMPREF9453_00564	Phage portal protein, HK97 family	NA
UHGV-1535956_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1535956_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1535956_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1535956_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1535956_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1535956_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1535956_31	UniRef90	UniRef90_UPI000FF6F232	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1535956_31	eggNOG-mapper	742743.HMPREF9453_00565	serine-type endopeptidase activity	NA
UHGV-1535956_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1535956_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1535956_31	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1535956_32	UniRef90	UniRef90_UPI00094F3068	head-tail connector protein	NA
UHGV-1535956_32	eggNOG-mapper	469617.FUAG_00838	Phage gp6-like head-tail connector protein	NA
UHGV-1535956_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1535956_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1535956_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1535956_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1535956_33	UniRef90	UniRef90_UPI0008D9BB34	terminase large subunit	NA
UHGV-1535956_33	eggNOG-mapper	742743.HMPREF9453_00567	large subunit	NA
UHGV-1535956_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1535956_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1535956_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1535956_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1535956_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1535956_34	UniRef90	UniRef90_UPI0008D9916E	NA	NA
UHGV-1535956_34	eggNOG-mapper	469617.FUAG_01834	HNH nucleases	NA
UHGV-1535956_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1535956_37	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-1535956_37	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1535956_38	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-1535956_39	PHROG	phrog_16126	NA	unknown function
UHGV-1535956_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1535956_40	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1535956_40	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1535956_40	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-1535956_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1535956_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1535956_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1535956_43	Structural annotation	PF05406	NA	NA
UHGV-1535956_44	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1535956_44	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1535956_44	UniRef90	UniRef90_R6AUC1	Primase C-terminal domain protein	NA
UHGV-1535956_44	eggNOG-mapper	1232428.CAVO010000021_gene813	Primase C terminal 2 (PriCT-2)	NA
UHGV-1535956_44	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1535956_44	Pfam	PF13481	AAA domain	AAA_25
UHGV-1535956_44	COG	COG3598	RecA-family ATPase	NA
UHGV-1535956_44	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-1535956_45	PHROG	phrog_2698	NA	unknown function
UHGV-1535956_45	Structural annotation	PF05037, NF007495	NA	NA
UHGV-1535956_46	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1535956_46	UniRef90	UniRef90_UPI000F633C17	ATP-binding protein	NA
UHGV-1535956_46	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-1535956_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-1535956_46	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1535956_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1535956_47	UniRef90	UniRef90_R6ADZ8	Siphovirus Gp157	NA
UHGV-1535956_47	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-1535956_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1535956_47	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1535956_48	Structural annotation	PF17600	NA	NA
UHGV-1535956_49	PHROG	phrog_31911	NA	unknown function
UHGV-1535956_49	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-1535956_49	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-1535956_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1535956_55	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1535956_55	UniRef90	UniRef90_UPI00047DA241	helix-turn-helix transcriptional regulator	NA
UHGV-1535956_55	eggNOG-mapper	591023.AM202_04437	sequence-specific DNA binding	NA
UHGV-1535956_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1535956_55	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1535956_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA