UHGV-1536297

Genome information

Genome length 38,457 bps

CDS count 38

Completeness 89.94% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1536297
vOTU ID	vOTU-021135
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0280901
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.03
Jumbo phage	No

Genome content
Genome length	38,457 bps
GC content	59.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	96.48%
Average CDS length	981.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1536297_2	Pfam	PF03412	Peptidase C39 family	Peptidase_C39
UHGV-1536297_4	eggNOG-mapper	1123401.JHYQ01000012_gene2901	NA	NA
UHGV-1536297_6	Structural annotation	PF11112, COG3311	NA	NA
UHGV-1536297_8	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1536297_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1536297_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1536297_10	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1536297_10	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1536297_10	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1536297_11	PHROG	phrog_1029	NA	unknown function
UHGV-1536297_11	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-1536297_11	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1536297_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1536297_12	PHROG	phrog_1499	NA	unknown function
UHGV-1536297_12	UniRef90	UniRef90_A0A1Q6JHZ0	AAA_23 domain-containing protein	NA
UHGV-1536297_12	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-1536297_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-1536297_12	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1536297_12	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1536297_13	PHROG	phrog_21613	NA	unknown function
UHGV-1536297_13	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-1536297_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1536297_14	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1536297_14	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-1536297_14	Pfam	PF12684	NA	DUF3799
UHGV-1536297_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1536297_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1536297_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1536297_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1536297_15	UniRef90	UniRef90_A0A2U1BEJ1	Single-stranded DNA-binding protein	NA
UHGV-1536297_15	eggNOG-mapper	718252.FP2_05080	Single-stranded DNA-binding protein	NA
UHGV-1536297_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1536297_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1536297_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1536297_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1536297_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1536297_16	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1536297_16	PHROG	phrog_11992	NA	unknown function
UHGV-1536297_16	UniRef90	UniRef90_A0A1Q6JHS4	ZnF_CHCC domain-containing protein	NA
UHGV-1536297_16	eggNOG-mapper	1007096.BAGW01000023_gene150	CHC2 zinc finger	NA
UHGV-1536297_16	PADLOC	drt-cluster192	DRT	DRT
UHGV-1536297_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1536297_16	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1536297_16	Structural annotation	PF01807	NA	NA
UHGV-1536297_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1536297_17	UniRef90	UniRef90_UPI00164DBC57	NA	NA
UHGV-1536297_17	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-1536297_17	Pfam	PF06048	NA	DUF927
UHGV-1536297_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1536297_17	COG	COG5519	NA	NA
UHGV-1536297_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1536297_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1536297_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1536297_18	UniRef90	UniRef90_A0A2U1BEG6	Superfamily II DNA or RNA helicase	NA
UHGV-1536297_18	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-1536297_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1536297_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1536297_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1536297_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1536297_18	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1536297_19	PHROG	phrog_824	NA	unknown function
UHGV-1536297_19	UniRef90	UniRef90_A0A1Q6JHZ3	VRR-NUC domain-containing protein	NA
UHGV-1536297_19	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-1536297_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1536297_19	Structural annotation	PF08774	NA	NA
UHGV-1536297_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1536297_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1536297_21	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1536297_21	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1536297_21	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1536297_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1536297_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1536297_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1536297_22	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1536297_22	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1536297_22	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1536297_24	PHROG	phrog_2412	NA	unknown function
UHGV-1536297_24	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1536297_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1536297_25	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1536297_25	UniRef90	UniRef90_A0A3D5TIM8	Terminase-like family protein	NA
UHGV-1536297_25	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1536297_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1536297_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1536297_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1536297_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-1536297_26	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1536297_26	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1536297_27	KOfam	K07584	NA	NA
UHGV-1536297_27	PHROG	phrog_4478	peptidase	other
UHGV-1536297_27	UniRef90	UniRef90_UPI00102FFAFD	ribosomal-processing cysteine protease Prp	NA
UHGV-1536297_27	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1536297_27	COG	COG2868	NA	NA
UHGV-1536297_27	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1536297_28	PHROG	phrog_13908	NA	unknown function
UHGV-1536297_28	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1536297_29	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1536297_29	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1536297_29	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1536297_29	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1536297_29	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1536297_31	PHROG	phrog_12105	NA	unknown function
UHGV-1536297_31	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1536297_32	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1536297_32	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1536297_32	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1536297_33	Structural annotation	NF038340	NA	NA
UHGV-1536297_34	PHROG	phrog_372	tail protein	tail
UHGV-1536297_34	UniRef90	UniRef90_UPI001D0897E0	NA	NA
UHGV-1536297_34	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1536297_34	Pfam	PF05895	NA	DUF859
UHGV-1536297_34	COG	COG4675	Phage tail collar domain	NA
UHGV-1536297_35	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-1536297_35	PHROG	phrog_2649	endolysin	lysis
UHGV-1536297_35	UniRef90	UniRef90_A0A645A9U3	PG_binding_1 domain-containing protein	NA
UHGV-1536297_35	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1536297_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1536297_35	Structural annotation	PF01471, TIGR02869, COG3409	NA	NA
UHGV-1536297_36	PHROG	phrog_22978	NA	unknown function
UHGV-1536297_36	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-1536297_36	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1536297_37	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-1536297_38	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1536297_38	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1536297_38	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-1536297_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1536297_38	Pfam	PF17891	Mu-like prophage FluMu N-terminal domain	FluMu_N
UHGV-1536297_38	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA