UHGV-1537574

Genome information

Genome length 37,297 bps

CDS count 60

Completeness 81.34% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1537574
vOTU ID	vOTU-022892
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258897
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.84
Jumbo phage	No

Genome content
Genome length	37,297 bps
GC content	51.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.56%
Average CDS length	566.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1537574_4	PHROG	phrog_14030	NA	unknown function
UHGV-1537574_4	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-1537574_4	eggNOG-mapper	1235797.C816_02842	mannosyl-glycoprotein	NA
UHGV-1537574_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1537574_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1537574_4	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA
UHGV-1537574_6	PHROG	phrog_1863	NA	unknown function
UHGV-1537574_6	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1537574_7	PHROG	phrog_30034	NA	unknown function
UHGV-1537574_7	UniRef90	UniRef90_UPI00189E45A0	chitinase	NA
UHGV-1537574_7	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1537574_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1537574_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1537574_8	UniRef90	UniRef90_UPI001AB0353E	reverse transcriptase domain-containing protein	NA
UHGV-1537574_8	eggNOG-mapper	1235800.C819_00470	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1537574_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1537574_8	Structural annotation	TIGR04416	NA	NA
UHGV-1537574_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1537574_9	UniRef90	UniRef90_UPI00164D8919	RNA-directed DNA polymerase	NA
UHGV-1537574_9	eggNOG-mapper	1410650.JHWL01000003_gene2820	Reverse transcriptase	NA
UHGV-1537574_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1537574_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1537574_9	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-1537574_10	PHROG	phrog_30516	NA	unknown function
UHGV-1537574_10	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1537574_11	PHROG	phrog_37900	NA	unknown function
UHGV-1537574_11	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-1537574_11	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1537574_11	Pfam	PF19789	NA	DUF6273
UHGV-1537574_11	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1537574_11	Structural annotation	PF19789, PF14686, NF040788, COG2512	NA	NA
UHGV-1537574_12	PHROG	phrog_18725	NA	unknown function
UHGV-1537574_12	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1537574_13	PHROG	phrog_13879	NA	unknown function
UHGV-1537574_13	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-1537574_13	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1537574_14	PHROG	phrog_1194	NA	unknown function
UHGV-1537574_14	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1537574_14	Pfam	PF20458	NA	DUF6711
UHGV-1537574_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1537574_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1537574_15	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1537574_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1537574_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1537574_16	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-1537574_17	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-1537574_17	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1537574_17	Pfam	PF16478	NA	DUF5055
UHGV-1537574_17	Structural annotation	PF16478	NA	NA
UHGV-1537574_18	PHROG	phrog_158	major tail protein	tail
UHGV-1537574_18	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-1537574_18	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1537574_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1537574_19	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1537574_20	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1537574_21	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1537574_22	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-1537574_22	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1537574_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1537574_22	Structural annotation	TIGR01560	NA	NA
UHGV-1537574_24	PHROG	phrog_247	major head protein	head and packaging
UHGV-1537574_24	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-1537574_24	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-1537574_24	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1537574_25	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-1537574_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1537574_27	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-1537574_27	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1537574_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1537574_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1537574_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1537574_28	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-1537574_28	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1537574_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1537574_28	COG	COG5410	NA	NA
UHGV-1537574_28	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1537574_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1537574_30	PHROG	phrog_95	integrase	integration and excision
UHGV-1537574_30	UniRef90	UniRef90_UPI00164DD5BB	recombinase family protein	NA
UHGV-1537574_30	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1537574_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1537574_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-1537574_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1537574_30	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1537574_32	PHROG	phrog_17101	NA	unknown function
UHGV-1537574_33	UniRef90	UniRef90_A0A5P8D6D5	Sequence-specific DNA binding RNA polymerase II transcription factor	NA
UHGV-1537574_34	PHROG	phrog_4264	NA	unknown function
UHGV-1537574_34	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-1537574_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1537574_36	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-1537574_36	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-1537574_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1537574_36	Structural annotation	PF16677	NA	NA
UHGV-1537574_38	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-1537574_38	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-1537574_38	eggNOG-mapper	1118054.CAGW01000016_gene4545	PucR C-terminal helix-turn-helix domain	NA
UHGV-1537574_38	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-1537574_38	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-1537574_38	Structural annotation	PF13556, COG2771	NA	NA
UHGV-1537574_40	UniRef90	UniRef90_A0A6I4T7Q6	Bifunctional protein FolD	NA
UHGV-1537574_40	eggNOG-mapper	1116369.KB890024_gene934	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-1537574_40	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-1537574_40	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-1537574_41	PHROG	phrog_22389	NA	unknown function
UHGV-1537574_41	Structural annotation	PF01402, COG4710	NA	NA
UHGV-1537574_46	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1537574_46	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1537574_46	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-1537574_46	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-1537574_46	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1537574_46	Pfam	PF19263	NA	DUF5906
UHGV-1537574_46	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1537574_46	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1537574_46	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1537574_46	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1537574_47	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1537574_47	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1537574_47	UniRef90	UniRef90_UPI001D0750B0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1537574_47	eggNOG-mapper	553973.CLOHYLEM_03974	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1537574_47	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1537574_47	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1537574_47	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1537574_48	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1537574_48	UniRef90	UniRef90_H1CER3	PriCT_1 domain-containing protein	NA
UHGV-1537574_48	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-1537574_48	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1537574_48	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1537574_48	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-1537574_49	PHROG	phrog_30550	NA	unknown function
UHGV-1537574_49	UniRef90	UniRef90_A0A1C6IGA3	Cell wall hydrolyses involved in spore germination	NA
UHGV-1537574_49	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1537574_52	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1537574_52	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1537574_52	UniRef90	UniRef90_UPI001898977C	FAD-dependent thymidylate synthase	NA
UHGV-1537574_52	eggNOG-mapper	1336241.JAEB01000001_gene147	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1537574_52	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1537574_52	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1537574_52	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1537574_52	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1537574_53	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1537574_53	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1537574_53	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-1537574_53	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-1537574_53	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1537574_53	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-1537574_54	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1537574_54	UniRef90	UniRef90_UPI001AB02E43	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-1537574_54	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1537574_54	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1537574_54	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1537574_54	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1537574_55	PHROG	phrog_1485	NA	unknown function
UHGV-1537574_55	UniRef90	UniRef90_H1CES0	NA	NA
UHGV-1537574_55	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-1537574_55	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1537574_56	Structural annotation	PF05037, NF005674	NA	NA
UHGV-1537574_58	AcrCatalog	cluster_73853	NA	NA
UHGV-1537574_59	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1537574_59	UniRef90	UniRef90_H1CES3	YqaJ domain-containing protein	NA
UHGV-1537574_59	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-1537574_59	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1537574_59	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1537574_59	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1537574_60	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1537574_60	UniRef90	UniRef90_UPI001A9A8367	ERF family protein	NA
UHGV-1537574_60	eggNOG-mapper	936572.HMPREF1148_0677	ERF superfamily	NA
UHGV-1537574_60	Pfam	PF04404	ERF superfamily	ERF
UHGV-1537574_60	Structural annotation	PF04404	NA	NA