UHGV-1538910

Genome information

Genome length 31,028 bps

CDS count 42

Completeness 76.88% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1538910
vOTU ID	vOTU-021044
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0372015
BioSample	SAMEA3664636
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.53
Jumbo phage	No

Genome content
Genome length	31,028 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.14%
Average CDS length	691.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1538910_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1538910_1	PHROG	phrog_435	endolysin	lysis
UHGV-1538910_1	UniRef90	UniRef90_A0A1C6E2B1	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1538910_1	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1538910_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1538910_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1538910_1	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1538910_2	PHROG	phrog_774	NA	unknown function
UHGV-1538910_2	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1538910_3	PHROG	phrog_443	holin	lysis
UHGV-1538910_3	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1538910_3	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1538910_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1538910_3	Structural annotation	PF16945	NA	NA
UHGV-1538910_4	PHROG	phrog_937	hemolysin	other
UHGV-1538910_6	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-1538910_8	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-1538910_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1538910_9	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-1538910_9	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-1538910_9	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1538910_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1538910_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1538910_9	COG	COG4926	Phage-related protein	NA
UHGV-1538910_9	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1538910_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1538910_10	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-1538910_10	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-1538910_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1538910_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1538910_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1538910_10	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1538910_11	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1538910_11	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1538910_11	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-1538910_11	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1538910_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1538910_11	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1538910_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1538910_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1538910_14	PHROG	phrog_88	major tail protein	tail
UHGV-1538910_14	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-1538910_14	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-1538910_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1538910_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1538910_15	PHROG	phrog_78	tail terminator	connector
UHGV-1538910_15	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-1538910_15	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1538910_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1538910_17	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-1538910_17	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1538910_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1538910_17	Structural annotation	PF05135	NA	NA
UHGV-1538910_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-1538910_19	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-1538910_19	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-1538910_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1538910_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1538910_20	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-1538910_20	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-1538910_20	Pfam	PF14265	NA	DUF4355
UHGV-1538910_20	Structural annotation	PF14265	NA	NA
UHGV-1538910_22	PHROG	phrog_1865	NA	unknown function
UHGV-1538910_22	Structural annotation	PF07073, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-1538910_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1538910_23	UniRef90	UniRef90_A0A1M6MYA3	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1538910_23	eggNOG-mapper	357809.Cphy_2969	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1538910_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1538910_23	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1538910_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1538910_23	COG	COG2369	NA	NA
UHGV-1538910_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1538910_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1538910_24	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-1538910_24	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1538910_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1538910_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1538910_24	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1538910_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-1538910_25	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-1538910_25	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1538910_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1538910_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1538910_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1538910_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1538910_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1538910_26	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-1538910_26	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-1538910_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1538910_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1538910_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1538910_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1538910_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1538910_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1538910_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1538910_27	UniRef90	UniRef90_A0A2A7B8V2	Terminase small subunit	NA
UHGV-1538910_27	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-1538910_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1538910_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1538910_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1538910_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1538910_28	UniRef90	UniRef90_A0A7Z0M6Y8	NA	NA
UHGV-1538910_28	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-1538910_28	Pfam	PF07374	NA	DUF1492
UHGV-1538910_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1538910_28	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1538910_29	PHROG	phrog_419	NA	unknown function
UHGV-1538910_29	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-1538910_29	Structural annotation	PF14083	NA	NA
UHGV-1538910_31	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1538910_31	UniRef90	UniRef90_A0A371AQS8	Endonuclease	NA
UHGV-1538910_31	eggNOG-mapper	1434319.W5RV07_9CAUD	HNH endonuclease	NA
UHGV-1538910_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1538910_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1538910_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1538910_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1538910_32	PHROG	phrog_1	integrase	integration and excision
UHGV-1538910_32	UniRef90	UniRef90_R6NAU0	Integrase	NA
UHGV-1538910_32	eggNOG-mapper	883096.HMPREF9699_01296	Belongs to the 'phage' integrase family	NA
UHGV-1538910_32	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1538910_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1538910_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1538910_32	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1538910_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1538910_33	PHROG	phrog_5696	NA	unknown function
UHGV-1538910_33	UniRef90	UniRef90_R6N7S7	N6_Mtase domain-containing protein	NA
UHGV-1538910_33	eggNOG-mapper	445972.ANACOL_00159	N-6 DNA Methylase	NA
UHGV-1538910_33	PADLOC	MTase_I_00018	Type I methyltransferase	RM
UHGV-1538910_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1538910_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1538910_33	Structural annotation	COG0286	NA	NA
UHGV-1538910_34	Structural annotation	PF13384, COG2771	NA	NA
UHGV-1538910_38	KOfam	K03700	recU; recombination protein U	NA
UHGV-1538910_38	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1538910_38	UniRef90	UniRef90_A0A4S2H9R9	Holliday junction resolvase RecU	NA
UHGV-1538910_38	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1538910_38	Pfam	PF03838	Recombination protein U	RecU
UHGV-1538910_38	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1538910_38	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1538910_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1538910_40	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-1538910_40	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-1538910_40	Structural annotation	PF01446	NA	NA