UHGV-1539276

Genome information

Genome length 27,694 bps

CDS count 34

Completeness 78.72% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1539276
vOTU ID	vOTU-018554
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0199793
BioSample	SAMEA3136698
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.58
Jumbo phage	No

Genome content
Genome length	27,694 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.38%
Average CDS length	740.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1539276_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1539276_1	PHROG	phrog_291	endolysin	lysis
UHGV-1539276_1	UniRef90	UniRef90_A0A564SYY2	Glycosyl hydrolases family 25	NA
UHGV-1539276_1	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-1539276_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1539276_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1539276_1	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-1539276_2	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-1539276_3	PHROG	phrog_18218	NA	unknown function
UHGV-1539276_3	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-1539276_3	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-1539276_3	Structural annotation	PF06946	NA	NA
UHGV-1539276_4	PHROG	phrog_1863	NA	unknown function
UHGV-1539276_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1539276_5	PHROG	phrog_28526	NA	unknown function
UHGV-1539276_5	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-1539276_5	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-1539276_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1539276_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1539276_7	UniRef90	UniRef90_UPI00156F87C5	RNA-directed DNA polymerase	NA
UHGV-1539276_7	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1539276_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1539276_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1539276_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1539276_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1539276_8	PHROG	phrog_17147	NA	unknown function
UHGV-1539276_8	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-1539276_8	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-1539276_9	PHROG	phrog_16164	NA	unknown function
UHGV-1539276_9	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-1539276_9	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1539276_10	Structural annotation	PF16323	NA	NA
UHGV-1539276_11	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-1539276_12	PHROG	phrog_11037	NA	unknown function
UHGV-1539276_12	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-1539276_12	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1539276_12	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1539276_12	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1539276_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1539276_12	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1539276_13	PHROG	phrog_13289	tail protein	tail
UHGV-1539276_13	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-1539276_13	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1539276_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1539276_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1539276_13	COG	COG4926	Phage-related protein	NA
UHGV-1539276_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1539276_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1539276_14	UniRef90	UniRef90_D4M599	Phage putative tail component, N-terminal domain	NA
UHGV-1539276_14	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-1539276_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1539276_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1539276_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1539276_15	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-1539276_15	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-1539276_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1539276_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1539276_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1539276_17	PHROG	phrog_88	major tail protein	tail
UHGV-1539276_17	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-1539276_17	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1539276_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1539276_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1539276_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1539276_18	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1539276_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1539276_18	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1539276_19	Structural annotation	PF05657	NA	NA
UHGV-1539276_20	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1539276_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1539276_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1539276_21	PHROG	phrog_749	NA	unknown function
UHGV-1539276_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1539276_22	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-1539276_22	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1539276_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1539276_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1539276_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1539276_22	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1539276_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1539276_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1539276_23	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1539276_23	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1539276_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1539276_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1539276_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1539276_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1539276_24	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-1539276_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1539276_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1539276_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1539276_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1539276_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1539276_25	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1539276_25	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1539276_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1539276_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1539276_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1539276_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1539276_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1539276_26	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1539276_26	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-1539276_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1539276_26	COG	COG5484	NA	NA
UHGV-1539276_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1539276_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1539276_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1539276_27	UniRef90	UniRef90_D4M587	HNH endonuclease	NA
UHGV-1539276_27	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-1539276_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1539276_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1539276_27	Structural annotation	PF09889, COG4068	NA	NA
UHGV-1539276_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1539276_28	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-1539276_28	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1539276_28	Pfam	PF07374	NA	DUF1492
UHGV-1539276_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1539276_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1539276_30	UniRef90	UniRef90_A0A373MPD0	XRE family transcriptional regulator	NA
UHGV-1539276_31	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-1539276_32	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-1539276_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1539276_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1539276_33	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-1539276_33	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-1539276_33	Pfam	PF00075	RNase H	RNase_H
UHGV-1539276_33	COG	COG0328	Ribonuclease HI	NA
UHGV-1539276_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1539276_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1539276_34	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-1539276_34	Structural annotation	PF21578, NF041486	NA	NA