UHGV-1539386

Genome information

Genome length 20,944 bps

CDS count 27

Completeness 56.86% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1539386
vOTU ID	vOTU-027623
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0197485
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.39
Jumbo phage	No

Genome content
Genome length	20,944 bps
GC content	39.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	90.36%
Average CDS length	701.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1539386_2	UniRef90	UniRef90_A0A6M0R6D7	Alginate lyase	NA
UHGV-1539386_2	eggNOG-mapper	1121334.KB911073_gene1922	NA	NA
UHGV-1539386_3	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1539386_3	UniRef90	UniRef90_R6N972	Hydrolase_2 domain-containing protein	NA
UHGV-1539386_3	eggNOG-mapper	428125.CLOLEP_03843	cell wall hydrolase	NA
UHGV-1539386_3	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1539386_3	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1539386_4	PHROG	phrog_199	holin	lysis
UHGV-1539386_4	UniRef90	UniRef90_UPI00164BAF69	phage holin family protein	NA
UHGV-1539386_4	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-1539386_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1539386_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1539386_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1539386_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1539386_5	PHROG	phrog_774	NA	unknown function
UHGV-1539386_5	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1539386_6	PHROG	phrog_918	NA	unknown function
UHGV-1539386_6	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-1539386_6	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1539386_6	Pfam	PF19791	NA	DUF6275
UHGV-1539386_6	Structural annotation	PF19791	NA	NA
UHGV-1539386_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1539386_7	PHROG	phrog_833	endolysin	lysis
UHGV-1539386_7	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1539386_7	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1539386_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1539386_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1539386_7	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-1539386_9	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-1539386_9	Structural annotation	PF01664	NA	NA
UHGV-1539386_10	PHROG	phrog_18190	NA	unknown function
UHGV-1539386_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1539386_11	PHROG	phrog_1194	NA	unknown function
UHGV-1539386_11	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-1539386_11	Pfam	PF20458	NA	DUF6711
UHGV-1539386_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1539386_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1539386_12	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-1539386_12	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1539386_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1539386_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1539386_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1539386_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1539386_13	UniRef90	UniRef90_UPI00085BF623	phage antirepressor KilAC domain-containing protein	NA
UHGV-1539386_13	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-1539386_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1539386_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1539386_13	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1539386_16	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-1539386_16	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-1539386_17	PHROG	phrog_706	NA	unknown function
UHGV-1539386_17	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-1539386_17	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-1539386_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1539386_17	Structural annotation	PF06854	NA	NA
UHGV-1539386_18	PHROG	phrog_11299	NA	unknown function
UHGV-1539386_18	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-1539386_18	Structural annotation	PF10666	NA	NA
UHGV-1539386_19	PHROG	phrog_3099	NA	unknown function
UHGV-1539386_19	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-1539386_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1539386_20	PHROG	phrog_3266	tail completion	connector
UHGV-1539386_20	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-1539386_20	Structural annotation	PF20765	NA	NA
UHGV-1539386_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1539386_21	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-1539386_21	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1539386_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1539386_21	Structural annotation	PF11114	NA	NA
UHGV-1539386_22	PHROG	phrog_3366	NA	unknown function
UHGV-1539386_22	Pfam	PF20536	NA	DUF6751
UHGV-1539386_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1539386_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1539386_23	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1539386_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-1539386_24	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-1539386_24	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1539386_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1539386_25	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-1539386_25	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1539386_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1539386_25	Structural annotation	PF06810	NA	NA
UHGV-1539386_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1539386_27	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-1539386_27	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-1539386_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1539386_27	COG	COG2369	NA	NA
UHGV-1539386_27	Structural annotation	PF06152, TIGR01641	NA	NA