UHGV-1539622

Genome information

vOTU vOTU-019125

Genome length 35,771 bps

CDS count 42

Completeness 89.26% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-1539622
vOTU ID	vOTU-019125
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0250062
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.54
Jumbo phage	No

Genome content
Genome length	35,771 bps
GC content	45.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.60%
Average CDS length	807.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1539622_2	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1539622_2	UniRef90	UniRef90_A0A380N5W7	Phage-related protein, tail component	NA
UHGV-1539622_2	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-1539622_2	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1539622_2	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1539622_2	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1539622_2	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-1539622_2	COG	COG1511	NA	NA
UHGV-1539622_2	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-1539622_3	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1539622_3	PHROG	phrog_329	minor tail protein	tail
UHGV-1539622_3	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-1539622_3	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-1539622_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1539622_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1539622_3	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-1539622_4	PHROG	phrog_18	minor tail protein	tail
UHGV-1539622_4	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-1539622_4	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-1539622_4	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1539622_4	COG	COG4672	Phage tail protein	NA
UHGV-1539622_4	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-1539622_5	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-1539622_5	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1539622_6	PHROG	phrog_22443	NA	unknown function
UHGV-1539622_6	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-1539622_6	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-1539622_6	COG	COG4913	NA	NA
UHGV-1539622_6	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1539622_7	PHROG	phrog_23549	NA	unknown function
UHGV-1539622_7	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-1539622_8	PHROG	phrog_27248	NA	unknown function
UHGV-1539622_9	PHROG	phrog_290	minor tail protein	tail
UHGV-1539622_9	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-1539622_9	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-1539622_9	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1539622_9	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-1539622_10	PHROG	phrog_17431	NA	unknown function
UHGV-1539622_10	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-1539622_10	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1539622_11	PHROG	phrog_222	tail protein	tail
UHGV-1539622_11	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-1539622_11	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-1539622_11	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-1539622_12	PHROG	phrog_27032	NA	unknown function
UHGV-1539622_12	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-1539622_13	PHROG	phrog_122	head decoration	head and packaging
UHGV-1539622_13	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-1539622_13	eggNOG-mapper	883156.HMPREF9282_01240	NA	NA
UHGV-1539622_13	Pfam	PF09956	NA	DUF2190
UHGV-1539622_13	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-1539622_13	Structural annotation	PF09956, COG5471	NA	NA
UHGV-1539622_14	KOfam	K06904	NA	NA
UHGV-1539622_14	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-1539622_14	UniRef90	UniRef90_A0A380N679	Mu-like prophage major head subunit gpT	NA
UHGV-1539622_14	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-1539622_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1539622_14	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1539622_14	COG	COG3087	Cell division protein FtsN	NA
UHGV-1539622_14	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-1539622_15	PHROG	phrog_21	portal protein	head and packaging
UHGV-1539622_15	UniRef90	UniRef90_A0A380N598	Phage portal protein, lambda family	NA
UHGV-1539622_15	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-1539622_15	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-1539622_15	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-1539622_15	COG	COG5511	Phage capsid protein	NA
UHGV-1539622_15	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-1539622_16	PHROG	phrog_20307	NA	unknown function
UHGV-1539622_16	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-1539622_16	Structural annotation	PF19645, COG1382	NA	NA
UHGV-1539622_17	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-1539622_17	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-1539622_17	UniRef90	UniRef90_A0A380N7T6	Bacteriophage tail assembly protein	NA
UHGV-1539622_17	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-1539622_17	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-1539622_17	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-1539622_17	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-1539622_17	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-1539622_18	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-1539622_18	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-1539622_18	UniRef90	UniRef90_A0A7C8GRI9	Terminase small subunit	NA
UHGV-1539622_18	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-1539622_18	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-1539622_18	Structural annotation	PF07471, COG4220	NA	NA
UHGV-1539622_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-1539622_21	UniRef90	UniRef90_A0A380N7U2	NA	NA
UHGV-1539622_21	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-1539622_21	Pfam	PF11753	NA	DUF3310
UHGV-1539622_21	Structural annotation	PF11753	NA	NA
UHGV-1539622_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1539622_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1539622_22	UniRef90	UniRef90_A0A380N5Y7	SNF2 family N-terminal domain	NA
UHGV-1539622_22	eggNOG-mapper	1128111.HMPREF0870_01776	SNF2 family	NA
UHGV-1539622_22	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1539622_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1539622_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1539622_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1539622_22	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1539622_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1539622_24	UniRef90	UniRef90_A0A380N7B1	VRR-NUC domain	NA
UHGV-1539622_24	eggNOG-mapper	1128111.HMPREF0870_01778	VRR_NUC	NA
UHGV-1539622_24	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1539622_25	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1539622_25	UniRef90	UniRef90_A0A380N688	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1539622_25	eggNOG-mapper	1128111.HMPREF0870_01779	Virulence-associated protein E	NA
UHGV-1539622_25	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1539622_25	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1539622_25	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1539622_26	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1539622_26	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1539622_26	UniRef90	UniRef90_A0A380N5A7	DNA polymerase I, thermostable	NA
UHGV-1539622_26	eggNOG-mapper	1128111.HMPREF0870_01780	DNA polymerase	NA
UHGV-1539622_26	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1539622_26	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1539622_26	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1539622_27	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1539622_27	UniRef90	UniRef90_A0A2S7YZ12	NA	NA
UHGV-1539622_27	eggNOG-mapper	1128111.HMPREF0870_01781	NA	NA
UHGV-1539622_27	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1539622_27	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1539622_28	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1539622_28	UniRef90	UniRef90_A0A380N7U3	Inactivated superfamily I helicase	NA
UHGV-1539622_28	eggNOG-mapper	1128111.HMPREF0870_01782	NA	NA
UHGV-1539622_28	Pfam	PF10926	NA	DUF2800
UHGV-1539622_28	COG	COG2887	RecB family exonuclease	NA
UHGV-1539622_28	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1539622_29	PHROG	phrog_18562	NA	unknown function
UHGV-1539622_29	eggNOG-mapper	1128111.HMPREF0870_01783	NA	NA
UHGV-1539622_32	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-1539622_32	UniRef90	UniRef90_A0A380N5B9	Adhesin yadA	NA
UHGV-1539622_32	eggNOG-mapper	1128111.HMPREF0870_01786	Hep Hag repeat protein	NA
UHGV-1539622_32	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-1539622_32	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-1539622_32	COG	COG5295	Autotransporter adhesin	NA
UHGV-1539622_32	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-1539622_34	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-1539622_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1539622_34	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-1539622_36	PHROG	phrog_6058	NA	unknown function
UHGV-1539622_36	Structural annotation	PF09035, NF033787	NA	NA
UHGV-1539622_38	UniRef90	UniRef90_A0A563DA47	XRE family transcriptional regulator	NA
UHGV-1539622_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1539622_38	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1539622_38	Structural annotation	PF13443, MF_00535, TIGR03070, COG1813	NA	NA
UHGV-1539622_39	UniRef90	UniRef90_UPI001AE12137	helix-turn-helix domain-containing protein	NA
UHGV-1539622_39	eggNOG-mapper	706434.HMPREF9429_00179	NA	NA
UHGV-1539622_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1539622_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1539622_40	eggNOG-mapper	469618.FVAG_01278	Helix-turn-helix XRE-family like proteins	NA
UHGV-1539622_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1539622_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1539622_41	Structural annotation	PF15028, COG5342	NA	NA
UHGV-1539622_42	KOfam	K14059	int; integrase	NA
UHGV-1539622_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1539622_42	UniRef90	UniRef90_A0A380N5C5	Tyrosine recombinase XerS	NA
UHGV-1539622_42	eggNOG-mapper	1128111.HMPREF0870_01795	Belongs to the 'phage' integrase family	NA
UHGV-1539622_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1539622_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1539622_42	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA