UHGV-1539707

Genome information

Genome length 53,595 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-1539707
vOTU ID	vOTU-075374
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0322996
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.13
Jumbo phage	No

Genome content
Genome length	53,595 bps
GC content	51.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	94.05%
Average CDS length	815.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1539707_2	PHROG	phrog_1086	NA	unknown function
UHGV-1539707_2	UniRef90	UniRef90_UPI001D0859DC	SH3 beta-barrel fold-containing protein	NA
UHGV-1539707_2	eggNOG-mapper	435591.BDI_0847	NA	NA
UHGV-1539707_2	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-1539707_2	Structural annotation	PF10902	NA	NA
UHGV-1539707_6	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1539707_6	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1539707_6	UniRef90	UniRef90_A0A1Y3VEV2	Restriction endonuclease	NA
UHGV-1539707_6	eggNOG-mapper	471854.Dfer_3124	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1539707_6	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1539707_6	COG	COG4748	NA	NA
UHGV-1539707_6	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1539707_7	PHROG	phrog_19292	NA	unknown function
UHGV-1539707_7	Structural annotation	PF11524, MF_00338, TIGR03884, COG0393	NA	NA
UHGV-1539707_9	UniRef90	UniRef90_A0A0T0M7U2	Glycyl-tRNA synthetase subunit alpha	NA
UHGV-1539707_9	eggNOG-mapper	886379.AEWI01000095_gene1548	NA	NA
UHGV-1539707_10	PHROG	phrog_5018	NA	unknown function
UHGV-1539707_10	UniRef90	UniRef90_A0A1P8PNT3	HTH HARE-type domain-containing protein	NA
UHGV-1539707_10	Structural annotation	PF11645, PF05066, MF_00048, NF040854, COG1591	NA	NA
UHGV-1539707_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1539707_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1539707_11	UniRef90	UniRef90_UPI0018997A55	helix-turn-helix transcriptional regulator	NA
UHGV-1539707_11	eggNOG-mapper	445970.ALIPUT_02025	NA	NA
UHGV-1539707_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1539707_11	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1539707_16	PHROG	phrog_14584	NA	unknown function
UHGV-1539707_16	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-1539707_17	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-1539707_17	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1539707_17	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1539707_17	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-1539707_17	Pfam	PF12684	NA	DUF3799
UHGV-1539707_17	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1539707_18	PHROG	phrog_26490	NA	unknown function
UHGV-1539707_18	eggNOG-mapper	1268240.ATFI01000008_gene2557	NA	NA
UHGV-1539707_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1539707_19	UniRef90	UniRef90_UPI0018A9D85E	HNH endonuclease	NA
UHGV-1539707_19	eggNOG-mapper	657309.BXY_08710	HNH nucleases	NA
UHGV-1539707_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1539707_20	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1539707_20	UniRef90	UniRef90_A0A413ITS5	NA	NA
UHGV-1539707_20	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-1539707_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1539707_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1539707_20	Structural annotation	PF14297	NA	NA
UHGV-1539707_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1539707_21	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1539707_21	UniRef90	UniRef90_A0A840CTK1	DNA replication protein DnaC	NA
UHGV-1539707_21	eggNOG-mapper	445970.ALIPUT_01605	NA	NA
UHGV-1539707_21	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1539707_23	PHROG	phrog_824	NA	unknown function
UHGV-1539707_23	UniRef90	UniRef90_A0A143XP07	VRR-NUC domain protein	NA
UHGV-1539707_23	eggNOG-mapper	445970.ALIPUT_00026	NA	NA
UHGV-1539707_25	PHROG	phrog_15937	NA	unknown function
UHGV-1539707_25	eggNOG-mapper	357276.EL88_12685	NA	NA
UHGV-1539707_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1539707_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1539707_26	UniRef90	UniRef90_UPI0011C74747	DNA cytosine methyltransferase	NA
UHGV-1539707_26	eggNOG-mapper	1033732.CAHI01000035_gene2755	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1539707_26	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1539707_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1539707_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1539707_26	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1539707_27	eggNOG-mapper	1235788.C802_00084	NA	NA
UHGV-1539707_29	PHROG	phrog_874	NA	unknown function
UHGV-1539707_29	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1539707_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1539707_37	PHROG	phrog_32516	NA	unknown function
UHGV-1539707_37	eggNOG-mapper	679935.Alfi_2698	NA	NA
UHGV-1539707_37	Structural annotation	PF11134, COG3292	NA	NA
UHGV-1539707_39	eggNOG-mapper	679935.Alfi_2700	NA	NA
UHGV-1539707_41	PHROG	phrog_22978	NA	unknown function
UHGV-1539707_41	eggNOG-mapper	272559.BF9343_1442	CRISPR-associated helicase, Cas3	NA
UHGV-1539707_41	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-1539707_41	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1539707_41	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1539707_41	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1539707_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-1539707_42	eggNOG-mapper	679935.Alfi_2703	NA	NA
UHGV-1539707_42	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1539707_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1539707_43	UniRef90	UniRef90_UPI001CCC7CAD	terminase	NA
UHGV-1539707_43	eggNOG-mapper	679935.Alfi_2709	Mu-like prophage FluMu protein gp28	NA
UHGV-1539707_43	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1539707_43	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1539707_45	PHROG	phrog_22323	NA	unknown function
UHGV-1539707_45	eggNOG-mapper	679935.Alfi_2711	NA	NA
UHGV-1539707_46	PHROG	phrog_26635	NA	unknown function
UHGV-1539707_46	UniRef90	UniRef90_A0A847E439	NA	NA
UHGV-1539707_46	eggNOG-mapper	679935.Alfi_2712	NA	NA
UHGV-1539707_48	PHROG	phrog_22135	NA	unknown function
UHGV-1539707_48	eggNOG-mapper	679935.Alfi_2714	NA	NA
UHGV-1539707_48	Structural annotation	PF17212	NA	NA
UHGV-1539707_52	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1539707_52	PHROG	phrog_366	tail fiber protein	tail
UHGV-1539707_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1539707_53	PHROG	phrog_22899	NA	unknown function
UHGV-1539707_53	Pfam	PF03382	NA	DUF285
UHGV-1539707_53	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1539707_55	PHROG	phrog_19698	NA	unknown function
UHGV-1539707_55	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-1539707_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1539707_57	PHROG	phrog_435	endolysin	lysis
UHGV-1539707_57	UniRef90	UniRef90_A0A1Y3VF16	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1539707_57	eggNOG-mapper	679935.Alfi_2718	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1539707_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1539707_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1539707_57	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1539707_58	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-1539707_59	Pfam	PF20647	NA	DUF6808
UHGV-1539707_59	Structural annotation	PF20647	NA	NA
UHGV-1539707_60	UniRef90	UniRef90_UPI00189939AA	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1539707_60	eggNOG-mapper	883096.HMPREF9699_01323	NA	NA
UHGV-1539707_60	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1539707_60	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-1539707_61	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1539707_61	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1539707_61	UniRef90	UniRef90_A0A1Y3VEY9	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-1539707_61	eggNOG-mapper	1127692.HMPREF9075_01620	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1539707_61	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1539707_61	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1539707_61	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1539707_62	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1539707_62	PHROG	phrog_1	integrase	integration and excision
UHGV-1539707_62	UniRef90	UniRef90_A0A1Y3VG18	Tyr recombinase domain-containing protein	NA
UHGV-1539707_62	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-1539707_62	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1539707_62	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1539707_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1539707_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1539707_62	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA