UHGV-1540477

Genome information

Genome length 32,569 bps

CDS count 39

Completeness 50.72% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1540477
vOTU ID	vOTU-036562
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258229
BioSample	SAMN04126235
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.78
Jumbo phage	No

Genome content
Genome length	32,569 bps
GC content	39.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.20%
Average CDS length	771.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1540477_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1540477_1	UniRef90	UniRef90_A0A2A6EEK5	Peptidase_S24 domain-containing protein (Fragment)	NA
UHGV-1540477_1	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-1540477_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1540477_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1540477_1	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1540477_2	UniRef90	UniRef90_UPI001180215C	helix-turn-helix domain-containing protein	NA
UHGV-1540477_4	UniRef90	UniRef90_A0A2G9ICR2	DNA-binding protein	NA
UHGV-1540477_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1540477_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1540477_5	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-1540477_5	UniRef90	UniRef90_UPI0018981759	phage antirepressor KilAC domain-containing protein	NA
UHGV-1540477_5	eggNOG-mapper	1127696.HMPREF9134_00474	Phage antirepressor protein KilAC domain	NA
UHGV-1540477_5	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1540477_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1540477_5	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1540477_5	Structural annotation	PF03374, COG3645	NA	NA
UHGV-1540477_6	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1540477_6	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1540477_6	UniRef90	UniRef90_A0A2M8TPU3	AAA_23 domain-containing protein	NA
UHGV-1540477_6	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1540477_6	Pfam	PF13476	AAA domain	AAA_23
UHGV-1540477_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1540477_6	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1540477_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1540477_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1540477_7	UniRef90	UniRef90_A0A2G8I6Q3	Recombinase RecT	NA
UHGV-1540477_7	eggNOG-mapper	1392486.JIAF01000004_gene2637	RecT family	NA
UHGV-1540477_7	Pfam	PF03837	RecT family	RecT
UHGV-1540477_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1540477_7	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1540477_8	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1540477_8	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1540477_8	UniRef90	UniRef90_A0A2G8I6M6	MBL fold hydrolase	NA
UHGV-1540477_8	eggNOG-mapper	1392486.JIAF01000004_gene2638	NA	NA
UHGV-1540477_8	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1540477_8	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1540477_8	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1540477_9	PHROG	phrog_19572	NA	unknown function
UHGV-1540477_9	UniRef90	UniRef90_A0A2T4TUB3	Phage tail protein	NA
UHGV-1540477_9	eggNOG-mapper	997352.HMPREF9419_0479	NA	NA
UHGV-1540477_9	Pfam	PF14902	NA	DUF4494
UHGV-1540477_9	Structural annotation	PF14902	NA	NA
UHGV-1540477_10	PHROG	phrog_824	NA	unknown function
UHGV-1540477_10	UniRef90	UniRef90_A0A2A6EEP1	Nuclease	NA
UHGV-1540477_10	eggNOG-mapper	679191.HMPREF9018_0429	VRR_NUC	NA
UHGV-1540477_10	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1540477_11	PHROG	phrog_16304	NA	unknown function
UHGV-1540477_11	UniRef90	UniRef90_E1GUC9	NA	NA
UHGV-1540477_11	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-1540477_11	Pfam	PF19808	NA	DUF6291
UHGV-1540477_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1540477_11	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1540477_12	eggNOG-mapper	435591.BDI_2864	NA	NA
UHGV-1540477_12	Structural annotation	PF20338	NA	NA
UHGV-1540477_15	PHROG	phrog_7964	NA	unknown function
UHGV-1540477_15	UniRef90	UniRef90_A0A134BJV2	Bacterial transferase hexapeptide repeat protein	NA
UHGV-1540477_15	eggNOG-mapper	1122981.AUME01000026_gene538	transferase	NA
UHGV-1540477_15	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1540477_15	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1540477_15	Structural annotation	MF_01691, NF040481, COG0663	NA	NA
UHGV-1540477_16	PHROG	phrog_98	NA	unknown function
UHGV-1540477_16	UniRef90	UniRef90_UPI00189AE9AA	YopX family protein	NA
UHGV-1540477_16	eggNOG-mapper	1122981.AUME01000026_gene537	YopX protein	NA
UHGV-1540477_16	Pfam	PF09643	YopX protein	YopX
UHGV-1540477_16	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1540477_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1540477_17	UniRef90	UniRef90_UPI0016698B3F	PcfK-like family protein	NA
UHGV-1540477_17	eggNOG-mapper	679189.HMPREF9019_0933	NA	NA
UHGV-1540477_17	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1540477_19	PHROG	phrog_20807	NA	unknown function
UHGV-1540477_19	UniRef90	UniRef90_A0A8G0QLG7	DNA injection channel protein A	NA
UHGV-1540477_19	eggNOG-mapper	1189620.AJXL01000069_gene3351	heat shock protein binding	NA
UHGV-1540477_19	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-1540477_19	Structural annotation	PF00684, TIGR00663, COG0592	NA	NA
UHGV-1540477_22	eggNOG-mapper	563008.HMPREF0665_01181	NA	NA
UHGV-1540477_22	Structural annotation	PF20204	NA	NA
UHGV-1540477_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1540477_26	PHROG	phrog_822	amidase	lysis
UHGV-1540477_26	UniRef90	UniRef90_A0A096ANW3	PGRP domain-containing protein	NA
UHGV-1540477_26	eggNOG-mapper	537011.PREVCOP_04383	COG COG3023 Negative regulator of beta-lactamase expression	NA
UHGV-1540477_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1540477_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1540477_26	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1540477_27	PHROG	phrog_8278	NA	unknown function
UHGV-1540477_29	PHROG	phrog_1775	minor head protein	head and packaging
UHGV-1540477_29	UniRef90	UniRef90_A0A134C1L0	Carbohydrate binding domain protein	NA
UHGV-1540477_29	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1540477_30	PHROG	phrog_3267	tail protein	tail
UHGV-1540477_30	UniRef90	UniRef90_E1KUD5	Ig-like domain-containing protein	NA
UHGV-1540477_30	eggNOG-mapper	866771.HMPREF9296_2495	NA	NA
UHGV-1540477_30	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-1540477_31	PHROG	phrog_17422	NA	unknown function
UHGV-1540477_31	eggNOG-mapper	866771.HMPREF9296_0182	NA	NA
UHGV-1540477_31	COG	COG4926	Phage-related protein	NA
UHGV-1540477_32	PHROG	phrog_22135	NA	unknown function
UHGV-1540477_32	eggNOG-mapper	1347393.HG726020_gene1827	NA	NA
UHGV-1540477_32	Structural annotation	PF17212	NA	NA
UHGV-1540477_34	PHROG	phrog_26635	NA	unknown function
UHGV-1540477_34	eggNOG-mapper	1349822.NSB1T_10605	NA	NA
UHGV-1540477_34	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1540477_35	PHROG	phrog_22323	NA	unknown function
UHGV-1540477_35	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-1540477_36	PHROG	phrog_27246	NA	unknown function
UHGV-1540477_36	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-1540477_36	Structural annotation	PF14164	NA	NA
UHGV-1540477_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1540477_37	UniRef90	UniRef90_A0A2G9ICV0	Terminase	NA
UHGV-1540477_37	eggNOG-mapper	1227276.HMPREF9148_00162	Mu-like prophage FluMu protein gp28	NA
UHGV-1540477_37	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1540477_37	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1540477_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-1540477_38	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-1540477_38	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1540477_39	PHROG	phrog_14770	NA	unknown function
UHGV-1540477_39	UniRef90	UniRef90_R7IZN6	SNF2 family protein	NA
UHGV-1540477_39	eggNOG-mapper	1227276.HMPREF9148_00165	helicase superfamily c-terminal domain	NA
UHGV-1540477_39	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1540477_39	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1540477_39	Structural annotation	PF18857, NF032893	NA	NA