UHGV-1540516

Genome information

vOTU vOTU-019008

Genome length 55,172 bps

CDS count 67

Completeness 87.49% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1540516
vOTU ID	vOTU-019008
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0349811
BioSample	SAMN05414933
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.01
Jumbo phage	No

Genome content
Genome length	55,172 bps
GC content	52.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.55%
Average CDS length	766.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1540516_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1540516_2	PHROG	phrog_6745	endolysin	lysis
UHGV-1540516_2	UniRef90	UniRef90_UPI000B06DDC9	glycosyl hydrolase family 25	NA
UHGV-1540516_2	eggNOG-mapper	1392502.JNIO01000008_gene2174	Glycosyl hydrolases family 25	NA
UHGV-1540516_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1540516_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1540516_2	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-1540516_3	PHROG	phrog_28789	NA	unknown function
UHGV-1540516_3	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-1540516_3	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-1540516_5	PHROG	phrog_9854	NA	unknown function
UHGV-1540516_5	UniRef90	UniRef90_A0A414NWG4	UDP-N-acetylglucosamine kinase	NA
UHGV-1540516_5	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-1540516_5	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1540516_5	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1540516_5	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1540516_5	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1540516_5	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1540516_8	UniRef90	UniRef90_A0A414NWI0	Hom_end_hint domain-containing protein	NA
UHGV-1540516_8	eggNOG-mapper	1485543.JMME01000020_gene776	NA	NA
UHGV-1540516_8	Pfam	PF05203	Hom_end-associated Hint	Hom_end_hint
UHGV-1540516_8	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1540516_8	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA
UHGV-1540516_9	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-1540516_10	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-1540516_10	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-1540516_11	Structural annotation	PF05899, MF_01537, NF007875, COG3123	NA	NA
UHGV-1540516_14	PHROG	phrog_6465	tail protein	tail
UHGV-1540516_14	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-1540516_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1540516_14	Structural annotation	COG4675	NA	NA
UHGV-1540516_15	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-1540516_15	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1540516_15	Structural annotation	PF05660, NF012201	NA	NA
UHGV-1540516_16	PHROG	phrog_5417	NA	unknown function
UHGV-1540516_16	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-1540516_16	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-1540516_16	Structural annotation	PF12571	NA	NA
UHGV-1540516_17	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-1540516_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1540516_17	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-1540516_18	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-1540516_18	Structural annotation	PF20387	NA	NA
UHGV-1540516_19	Structural annotation	PF20387	NA	NA
UHGV-1540516_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1540516_21	UniRef90	UniRef90_UPI0004838F8E	NA	NA
UHGV-1540516_21	eggNOG-mapper	1485543.JMME01000020_gene788	NA	NA
UHGV-1540516_21	Pfam	PF17236	NA	DUF5309
UHGV-1540516_21	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-1540516_22	eggNOG-mapper	1485543.JMME01000020_gene789	NA	NA
UHGV-1540516_24	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1540516_24	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-1540516_24	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-1540516_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1540516_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1540516_25	PHROG	phrog_5902	NA	unknown function
UHGV-1540516_25	UniRef90	UniRef90_A0A414NWF6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1540516_25	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-1540516_25	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1540516_25	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1540516_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1540516_26	UniRef90	UniRef90_A0A414NWE7	Helix-turn-helix domain-containing protein	NA
UHGV-1540516_26	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-1540516_26	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1540516_26	Structural annotation	PF07141	NA	NA
UHGV-1540516_27	PHROG	phrog_419	NA	unknown function
UHGV-1540516_27	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-1540516_27	Structural annotation	PF14083	NA	NA
UHGV-1540516_29	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1540516_31	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1540516_31	UniRef90	UniRef90_UPI001CD287D6	AAA family ATPase	NA
UHGV-1540516_31	eggNOG-mapper	1329516.JPST01000013_gene230	AAA domain	NA
UHGV-1540516_31	Pfam	PF13671	AAA domain	AAA_33
UHGV-1540516_31	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-1540516_31	Structural annotation	PF13671, MF_00065, TIGR03574, COG4088	NA	NA
UHGV-1540516_35	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1540516_35	Pfam	PF09889	NA	DUF2116
UHGV-1540516_35	Structural annotation	PF10013, COG4338	NA	NA
UHGV-1540516_36	PHROG	phrog_4897	kinase	other
UHGV-1540516_36	UniRef90	UniRef90_A0A414NWR2	NA	NA
UHGV-1540516_36	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-1540516_36	Pfam	PF11753	NA	DUF3310
UHGV-1540516_37	Structural annotation	PF13051, PF06892, MF_00948, NF000331, COG2139	NA	NA
UHGV-1540516_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1540516_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1540516_38	UniRef90	UniRef90_A0A414NWU9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1540516_38	eggNOG-mapper	936573.HMPREF1147_1316	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1540516_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1540516_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1540516_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1540516_40	PHROG	phrog_2340	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1540516_40	UniRef90	UniRef90_A0A5Q2W3H9	Putative HNHc nuclease	NA
UHGV-1540516_40	eggNOG-mapper	10761.Q716E9_BPSFV	NA	NA
UHGV-1540516_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1540516_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1540516_41	UniRef90	UniRef90_A0A414NWF1	Single-stranded DNA-binding protein	NA
UHGV-1540516_41	eggNOG-mapper	546271.Selsp_1347	Single-strand binding protein family	NA
UHGV-1540516_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1540516_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1540516_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1540516_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1540516_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1540516_43	Structural annotation	PF08861, COG5440	NA	NA
UHGV-1540516_44	Structural annotation	PF08861, COG5440	NA	NA
UHGV-1540516_45	PHROG	phrog_15946	NA	unknown function
UHGV-1540516_45	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-1540516_46	PHROG	phrog_4652	NA	unknown function
UHGV-1540516_46	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-1540516_46	Structural annotation	TIGR02582	NA	NA
UHGV-1540516_49	PHROG	phrog_9804	NA	unknown function
UHGV-1540516_49	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-1540516_49	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-1540516_49	Structural annotation	PF11417	NA	NA
UHGV-1540516_50	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1540516_50	UniRef90	UniRef90_A0A554J835	Bacteriophage-like protein	NA
UHGV-1540516_50	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-1540516_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1540516_50	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-1540516_51	PHROG	phrog_398	NA	unknown function
UHGV-1540516_51	UniRef90	UniRef90_A0A414NWE1	NA	NA
UHGV-1540516_51	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1540516_51	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1540516_51	Structural annotation	PF16784	NA	NA
UHGV-1540516_52	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1540516_52	UniRef90	UniRef90_UPI0009F184EE	ERF family protein	NA
UHGV-1540516_52	eggNOG-mapper	413066.A1EAD0_9CAUD	ERF superfamily	NA
UHGV-1540516_52	Pfam	PF04404	ERF superfamily	ERF
UHGV-1540516_52	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1540516_53	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1540516_53	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-1540516_53	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1540516_53	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1540516_53	Structural annotation	PF05565	NA	NA
UHGV-1540516_57	UniRef90	UniRef90_A0A414NWC8	DNA-binding protein	NA
UHGV-1540516_57	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1540516_57	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1540516_57	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1540516_60	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1540516_60	UniRef90	UniRef90_A0A1R7MSK0	Toxin Bro	NA
UHGV-1540516_60	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-1540516_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1540516_60	COG	COG3617	Prophage antirepressor	NA
UHGV-1540516_60	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1540516_61	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1540516_61	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1540516_61	UniRef90	UniRef90_D1YMA5	DNA-binding helix-turn-helix protein	NA
UHGV-1540516_61	eggNOG-mapper	1401067.HMPREF0872_06900	DNA-binding helix-turn-helix protein	NA
UHGV-1540516_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1540516_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1540516_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1540516_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1540516_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1540516_62	UniRef90	UniRef90_A0A5D6WD79	Helix-turn-helix transcriptional regulator	NA
UHGV-1540516_62	eggNOG-mapper	864563.HMPREF9166_0600	sequence-specific DNA binding	NA
UHGV-1540516_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1540516_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1540516_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1540516_63	PHROG	phrog_87	metallo-protease	other
UHGV-1540516_63	UniRef90	UniRef90_A0A5D6WAM0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1540516_63	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-1540516_63	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1540516_63	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1540516_63	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1540516_64	eggNOG-mapper	386456.JQKN01000001_gene2248	PFAM nucleic acid binding, OB-fold, tRNA helicase-type	NA
UHGV-1540516_64	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-1540516_64	COG	COG4085	DNA/RNA endonuclease YhcR, contains UshA esterase domain	NA
UHGV-1540516_67	KOfam	K07496	K07496; putative transposase	NA
UHGV-1540516_67	PHROG	phrog_506	transposase	integration and excision
UHGV-1540516_67	UniRef90	UniRef90_D2RKC6	Transposase, IS605 OrfB family	NA
UHGV-1540516_67	eggNOG-mapper	591001.Acfer_1166	COG0675 Transposase and inactivated derivatives	NA
UHGV-1540516_67	PADLOC	V_U4	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-1540516_67	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-1540516_67	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-1540516_67	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-1540516_67	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-1540516_67	COG	COG0675	Transposase	NA
UHGV-1540516_67	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA