UHGV-1540861

Genome information

vOTU vOTU-019192

Genome length 32,119 bps

CDS count 57

Completeness 74.66% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1540861
vOTU ID	vOTU-019192
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0249344
BioSample	SAMN03922519
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.34
Jumbo phage	No

Genome content
Genome length	32,119 bps
GC content	54.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.93%
Average CDS length	528.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1540861_1	PHROG	phrog_27197	NA	unknown function
UHGV-1540861_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1540861_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1540861_4	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-1540861_4	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-1540861_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-1540861_4	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1540861_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1540861_5	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1540861_5	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1540861_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1540861_6	PHROG	phrog_7566	NA	unknown function
UHGV-1540861_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1540861_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1540861_7	UniRef90	UniRef90_A0A0S2W7E3	Single-stranded DNA-binding protein	NA
UHGV-1540861_7	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-1540861_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1540861_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1540861_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1540861_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1540861_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1540861_8	PHROG	phrog_15768	NA	unknown function
UHGV-1540861_8	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-1540861_8	eggNOG-mapper	888059.HMPREF9071_2037	NA	NA
UHGV-1540861_8	Pfam	PF19808	NA	DUF6291
UHGV-1540861_8	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1540861_8	Structural annotation	PF19808	NA	NA
UHGV-1540861_9	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1540861_9	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-1540861_9	eggNOG-mapper	768704.Desmer_4473	NA	NA
UHGV-1540861_9	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1540861_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1540861_10	Structural annotation	PF20987	NA	NA
UHGV-1540861_12	UniRef90	UniRef90_A0A1Y3REZ9	NA	NA
UHGV-1540861_13	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1540861_13	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-1540861_13	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-1540861_13	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1540861_13	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-1540861_14	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1540861_14	UniRef90	UniRef90_A0A2U1BC09	NA	NA
UHGV-1540861_14	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1540861_14	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1540861_15	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1540861_15	UniRef90	UniRef90_A0A2U1BEG9	Helix-turn-helix protein	NA
UHGV-1540861_15	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-1540861_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1540861_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1540861_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1540861_19	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-1540861_19	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1540861_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1540861_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1540861_20	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-1540861_20	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1540861_20	Structural annotation	PF13542	NA	NA
UHGV-1540861_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1540861_21	PHROG	phrog_10250	NA	unknown function
UHGV-1540861_21	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-1540861_21	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1540861_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1540861_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1540861_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1540861_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1540861_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1540861_22	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1540861_22	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1540861_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1540861_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1540861_23	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1540861_23	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1540861_23	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1540861_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1540861_23	COG	COG2369	NA	NA
UHGV-1540861_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1540861_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1540861_24	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-1540861_24	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1540861_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1540861_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1540861_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1540861_25	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1540861_25	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1540861_25	UniRef90	UniRef90_UPI001D0756FD	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1540861_25	eggNOG-mapper	1042156.CXIVA_01880	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1540861_25	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1540861_25	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1540861_25	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1540861_26	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1540861_26	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-1540861_26	eggNOG-mapper	397287.C807_02203	NA	NA
UHGV-1540861_26	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1540861_27	Structural annotation	PF06810	NA	NA
UHGV-1540861_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-1540861_28	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1540861_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1540861_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1540861_30	PHROG	phrog_17977	NA	unknown function
UHGV-1540861_30	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1540861_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1540861_31	PHROG	phrog_1233	NA	unknown function
UHGV-1540861_31	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1540861_32	PHROG	phrog_17405	head protein	head and packaging
UHGV-1540861_32	Structural annotation	PF11367	NA	NA
UHGV-1540861_33	PHROG	phrog_885	major tail protein	tail
UHGV-1540861_33	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1540861_33	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1540861_33	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1540861_34	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1540861_36	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1540861_36	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1540861_36	COG	COG1511	NA	NA
UHGV-1540861_38	PHROG	phrog_32744	NA	unknown function
UHGV-1540861_38	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1540861_38	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1540861_39	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-1540861_39	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-1540861_40	PHROG	phrog_24451	NA	unknown function
UHGV-1540861_40	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-1540861_41	PHROG	phrog_19695	NA	unknown function
UHGV-1540861_41	UniRef90	UniRef90_A0A1C6JA86	Collagen triple helix repeat (20 copies)	NA
UHGV-1540861_41	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-1540861_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1540861_41	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1540861_43	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1540861_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1540861_45	PHROG	phrog_435	endolysin	lysis
UHGV-1540861_45	UniRef90	UniRef90_UPI0018995CE7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1540861_45	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-1540861_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1540861_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1540861_45	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-1540861_46	PHROG	phrog_1129	holin	lysis
UHGV-1540861_46	UniRef90	UniRef90_A0A3D4QXE9	Enolase	NA
UHGV-1540861_46	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1540861_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1540861_46	Structural annotation	PF06946	NA	NA
UHGV-1540861_47	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-1540861_48	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1540861_48	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1540861_50	PHROG	phrog_3754	NA	unknown function
UHGV-1540861_50	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1540861_51	PHROG	phrog_21718	NA	unknown function
UHGV-1540861_51	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1540861_52	PHROG	phrog_22984	NA	unknown function
UHGV-1540861_53	PHROG	phrog_16490	NA	unknown function
UHGV-1540861_53	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1540861_54	PHROG	phrog_20016	NA	unknown function
UHGV-1540861_54	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1540861_54	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1540861_54	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1540861_56	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1540861_57	eggNOG-mapper	1297617.JPJD01000022_gene1716	NA	NA