UHGV-1541362

Genome information

Genome length 29,104 bps

CDS count 35

Completeness 80.68% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1541362
vOTU ID	vOTU-035256
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0220784
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.75
Jumbo phage	No

Genome content
Genome length	29,104 bps
GC content	43.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.05%
Average CDS length	768.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1541362_1	UniRef90	UniRef90_E9SCY0	Putative lipoprotein	NA
UHGV-1541362_1	eggNOG-mapper	1160721.RBI_II00613	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation	NA
UHGV-1541362_1	COG	COG0760	Peptidyl-prolyl isomerase, parvulin family	NA
UHGV-1541362_2	KOfam	K02529	lacI, galR; LacI family transcriptional regulator	NA
UHGV-1541362_2	PHROG	phrog_5594	NA	unknown function
UHGV-1541362_2	UniRef90	UniRef90_W0U967	GGDEF domain-containing protein	NA
UHGV-1541362_2	eggNOG-mapper	1160721.RBI_II00612	diguanylate cyclase	NA
UHGV-1541362_2	Pfam	PF13377	Periplasmic binding protein-like domain	Peripla_BP_3
UHGV-1541362_2	Pfam	PF00990	Diguanylate cyclase, GGDEF domain	GGDEF
UHGV-1541362_2	NCBIFam	TIGR00254.1	diguanylate cyclase	NA
UHGV-1541362_2	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-1541362_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1541362_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1541362_4	UniRef90	UniRef90_A0A373PZX2	XRE family transcriptional regulator	NA
UHGV-1541362_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1541362_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1541362_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1541362_5	PHROG	phrog_6160	NA	unknown function
UHGV-1541362_7	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1541362_8	PHROG	phrog_8781	endolysin	lysis
UHGV-1541362_8	UniRef90	UniRef90_A0A373PY71	CHAP domain-containing protein	NA
UHGV-1541362_8	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1541362_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-1541362_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1541362_8	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-1541362_9	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-1541362_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1541362_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1541362_10	PHROG	phrog_134	NA	unknown function
UHGV-1541362_10	UniRef90	UniRef90_A0A373PY86	XkdX family protein	NA
UHGV-1541362_10	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1541362_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1541362_10	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1541362_10	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1541362_12	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-1541362_12	Structural annotation	PF10651	NA	NA
UHGV-1541362_13	Structural annotation	PF21295, NF012201	NA	NA
UHGV-1541362_14	PHROG	phrog_3558	tail protein	tail
UHGV-1541362_14	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-1541362_14	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-1541362_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1541362_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1541362_14	COG	COG4926	Phage-related protein	NA
UHGV-1541362_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1541362_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1541362_15	UniRef90	UniRef90_A0A256SIK9	Phage tail protein	NA
UHGV-1541362_15	eggNOG-mapper	1487921.DP68_11370	tail component	NA
UHGV-1541362_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1541362_15	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1541362_16	PHROG	phrog_23464	NA	unknown function
UHGV-1541362_16	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-1541362_16	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-1541362_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1541362_16	Structural annotation	COG5280	NA	NA
UHGV-1541362_17	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-1541362_18	Structural annotation	PF17388	NA	NA
UHGV-1541362_19	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1541362_19	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-1541362_19	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1541362_20	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1541362_20	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1541362_20	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1541362_20	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1541362_20	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1541362_20	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1541362_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1541362_22	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-1541362_22	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-1541362_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1541362_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1541362_23	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1541362_23	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-1541362_23	eggNOG-mapper	561177.ANHYDRO_01412	NA	NA
UHGV-1541362_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1541362_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1541362_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1541362_24	PHROG	phrog_5223	neck protein	connector
UHGV-1541362_24	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-1541362_24	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-1541362_24	Structural annotation	TIGR01560	NA	NA
UHGV-1541362_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-1541362_25	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-1541362_25	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1541362_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1541362_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1541362_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1541362_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1541362_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1541362_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1541362_26	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1541362_26	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-1541362_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1541362_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1541362_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1541362_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1541362_27	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-1541362_27	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-1541362_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1541362_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1541362_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1541362_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1541362_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1541362_28	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-1541362_28	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-1541362_28	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1541362_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1541362_28	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-1541362_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1541362_28	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-1541362_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1541362_29	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-1541362_29	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-1541362_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1541362_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1541362_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1541362_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1541362_30	PHROG	phrog_1066	NA	unknown function
UHGV-1541362_30	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-1541362_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1541362_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1541362_31	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-1541362_31	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-1541362_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1541362_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1541362_32	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-1541362_32	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-1541362_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1541362_32	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1541362_34	PHROG	phrog_8684	NA	unknown function
UHGV-1541362_34	UniRef90	UniRef90_UPI00189B8BA4	YopX family protein	NA
UHGV-1541362_34	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-1541362_34	Pfam	PF09643	YopX protein	YopX
UHGV-1541362_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1541362_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1541362_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1541362_35	UniRef90	UniRef90_W0U9C6	Phage terminase large subunit	NA
UHGV-1541362_35	eggNOG-mapper	1160721.RBI_II00397	Phage terminase, large subunit, PBSX family	NA
UHGV-1541362_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1541362_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1541362_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1541362_35	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA