UHGV-1541488

Genome information

Genome length 58,405 bps

CDS count 61

Completeness 91.96% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1541488
vOTU ID	vOTU-071646
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0353224
BioSample	SAMEA2338693
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.41
Jumbo phage	No

Genome content
Genome length	58,405 bps
GC content	43.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.31%
Average CDS length	877.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1541488_3	eggNOG-mapper	1227276.HMPREF9148_00167	NA	NA
UHGV-1541488_5	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1541488_5	UniRef90	UniRef90_UPI001F14BA06	SNF2-related protein	NA
UHGV-1541488_5	eggNOG-mapper	1227276.HMPREF9148_00165	helicase superfamily c-terminal domain	NA
UHGV-1541488_5	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-1541488_5	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1541488_5	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1541488_5	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1541488_6	KOfam	K09515	DNAJB9; DnaJ homolog subfamily B member 9	NA
UHGV-1541488_6	PHROG	phrog_14336	NA	unknown function
UHGV-1541488_6	UniRef90	UniRef90_UPI001C38AF37	DnaJ domain-containing protein	NA
UHGV-1541488_6	eggNOG-mapper	683837.lse_1389	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-1541488_6	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-1541488_6	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-1541488_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1541488_8	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-1541488_8	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1541488_8	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1541488_8	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1541488_9	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-1541488_9	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-1541488_9	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-1541488_11	PHROG	phrog_22323	NA	unknown function
UHGV-1541488_11	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1541488_12	PHROG	phrog_26635	NA	unknown function
UHGV-1541488_12	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-1541488_12	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-1541488_12	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1541488_14	PHROG	phrog_22135	NA	unknown function
UHGV-1541488_14	Structural annotation	PF17212	NA	NA
UHGV-1541488_15	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1541488_15	PHROG	phrog_11541	NA	unknown function
UHGV-1541488_15	UniRef90	UniRef90_UPI001C38695F	GDSL-type esterase/lipase family protein	NA
UHGV-1541488_15	eggNOG-mapper	658086.HMPREF0994_05977	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1541488_15	Pfam	PF16255	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL_lke
UHGV-1541488_15	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1541488_17	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-1541488_17	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1541488_19	PHROG	phrog_15037	NA	unknown function
UHGV-1541488_19	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-1541488_19	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-1541488_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1541488_20	PHROG	phrog_873	endolysin	head and packaging
UHGV-1541488_20	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-1541488_20	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-1541488_21	PHROG	phrog_26448	NA	unknown function
UHGV-1541488_21	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-1541488_21	Pfam	PF20647	NA	DUF6808
UHGV-1541488_21	Structural annotation	PF20647	NA	NA
UHGV-1541488_22	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-1541488_22	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1541488_25	Structural annotation	PF10628	NA	NA
UHGV-1541488_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-1541488_28	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-1541488_28	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1541488_33	PHROG	phrog_32516	NA	unknown function
UHGV-1541488_33	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-1541488_33	Structural annotation	PF11134, COG3292	NA	NA
UHGV-1541488_37	PHROG	phrog_5558	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1541488_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1541488_38	UniRef90	UniRef90_UPI00189B4653	NA	NA
UHGV-1541488_38	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-1541488_38	Pfam	PF04448	NA	DUF551
UHGV-1541488_40	PHROG	phrog_874	NA	unknown function
UHGV-1541488_40	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1541488_40	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1541488_41	PHROG	phrog_37478	NA	unknown function
UHGV-1541488_44	eggNOG-mapper	471870.BACINT_00443	NA	NA
UHGV-1541488_45	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1541488_45	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1541488_45	UniRef90	UniRef90_A0A3R5X8M2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1541488_45	eggNOG-mapper	1122947.FR7_2498	Cytosine-specific methyltransferase	NA
UHGV-1541488_45	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1541488_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1541488_45	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1541488_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1541488_45	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1541488_47	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1541488_47	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1541488_47	UniRef90	UniRef90_A0A496CW25	Replicative DNA helicase	NA
UHGV-1541488_47	eggNOG-mapper	312153.Pnuc_0424	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1541488_47	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1541488_47	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-1541488_47	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1541488_47	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1541488_47	COG	COG0305	Replicative DNA helicase	NA
UHGV-1541488_47	Structural annotation	PF03796, PF05203, PF00772, MF_04155, MF_01420, TIGR00665, COG0305	NA	NA
UHGV-1541488_48	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1541488_48	UniRef90	UniRef90_UPI001F03A329	NA	NA
UHGV-1541488_48	eggNOG-mapper	511437.Lbuc_1442	NA	NA
UHGV-1541488_48	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1541488_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1541488_48	Structural annotation	PF14297, COG3756	NA	NA
UHGV-1541488_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1541488_54	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-1541488_54	eggNOG-mapper	1358423.N180_03020	NA	NA
UHGV-1541488_56	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1541488_56	UniRef90	UniRef90_A0A412WPV2	Recombinase	NA
UHGV-1541488_56	eggNOG-mapper	742725.HMPREF9450_02079	NA	NA
UHGV-1541488_56	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1541488_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1541488_56	Structural annotation	PF05766	NA	NA
UHGV-1541488_57	PHROG	phrog_19572	NA	unknown function
UHGV-1541488_57	UniRef90	UniRef90_A0A412QSR3	NA	NA
UHGV-1541488_57	eggNOG-mapper	435591.BDI_0545	Phage tail protein	NA
UHGV-1541488_57	Pfam	PF14902	NA	DUF4494
UHGV-1541488_57	Structural annotation	PF14902	NA	NA
UHGV-1541488_58	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1541488_58	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-1541488_58	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-1541488_58	Pfam	PF07105	NA	DUF1367
UHGV-1541488_58	Structural annotation	PF07105	NA	NA
UHGV-1541488_59	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-1541488_59	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-1541488_61	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1541488_61	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-1541488_61	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-1541488_61	Pfam	PF04404	ERF superfamily	ERF
UHGV-1541488_61	Structural annotation	PF04404	NA	NA